Protein Alignment Hnf4 and nhr-9

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_498550.1
• Gene: nhr-9 / 191718
• WormBaseID: WBGene00003608
• Length: 332
• Species: Caenorhabditis elegans
• Alignment Length: 339
• Identity: 80/339 - (23%)
• Similarity: 134/339 - (39%)
• Gaps: 68/339 - (20%)

  Fly   150 GTNSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVV 214
            |:.||:::            ||||.......:||..||:.||.||||:.....:..|....||
 Worm     6 GSTSSERR------------CAICSKLGNSYNYGVLSCNACKMFFRRATLGKSEKFCINNDNC-- 56

  Fly   215 DKDKRN---QCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESR 276
              |..|   .||.||..||.|.||:  .|.|:.|       |.||        :|.::...|..|
 Worm    57 --DTSNLILTCRQCRYNKCLKMGMR--IVTNQYD-------SLDD--------IIKVLAKWNLDR 102

  Fly   277 QSKA---GAAMEPNINEDL----------SNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQ 328
            .:|.   ....:|.:::.:          ||..|:.    .|....:.||.||:..:......|.
 Worm   103 SNKLMNFQCFEDPTLDQVIQKHPVFTKKPSNLSFSK----SEWGFMEQLTTVEFMSKFEFTRHLF 163

  Fly   329 LDDQVALLRAHAGE--HLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLV--SPNLDISRIGARI 389
            .:|...:|::...:  ..:..:...||..:|:.......::    |..||  ..:..::|:..|:
 Worm   164 SEDFRIVLKSSCFKIASFIKAVRSYSMKKEDIRYPDGELIV----PMELVPFCTSEFLARVQCRL 224

  Fly   390 IDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHR-IKSLRHQILNNLEDYISDRQYESRG 453
            |..::    ::.:.:.||..:.|:...||.|..|....| |.|....:.|:....:..|...|.|
 Worm   225 IGRII----ELKLKEEEFLLLIAIFVCDPTANNLTARGREILSFHQNVYNDALLQLCLRNEGSCG 285

  Fly   454 --RFGEILLILPVL 465
              ||.::|.:..|:
 Worm   286 PARFNDLLSVCHVV 299

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	30/77 (39%)
		NR_LBD_HNF4_like	264..494	CDD:132729	43/222 (19%)
nhr-9	NP_498550.1	ZnF_C4	14..79	CDD:197701	27/68 (40%)
		HOLI	142..302	CDD:214658	34/166 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910