DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-247

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_506798.1 Gene:nhr-247 / 191500 WormBaseID:WBGene00014193 Length:337 Species:Caenorhabditis elegans


Alignment Length:371 Identity:89/371 - (23%)
Similarity:153/371 - (41%) Gaps:61/371 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 TNSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVD 215
            |:|...:..|::       |.:||....|..|||.:|.||..||||::...:...|....||.:.
 Worm     2 TSSEPSETPQKR-------CLVCGGTPNGSRYGALACLGCIVFFRRAISNANVKNCDNNSNCKIG 59

  Fly   216 KDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSKA 280
            .:.:|.||.|||:||.:.||..:|:|: ||.|..|:.                ||.|.|:::||.
 Worm    60 FETKNCCRSCRLQKCLQVGMNPKAIQH-RDLIGPRKP----------------VKVEPETQKSKL 107

  Fly   281 GAAMEPNINEDLSNKQF----------------ASINDVCESMKQQLLTLVEWAKQIPAFNELQL 329
            ...:|      |..||:                |..:||...|.......:.||.....|.:|. 
 Worm   108 HHLLE------LQRKQWSRNQKHQAQTGSFKKQADSDDVRFVMSLGFQNALSWANHFETFTKLS- 165

  Fly   330 DDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDI---SRIGARIID 391
            :||.||:.:..|...:| :.:.....:|.   ...|.|.::.....:|...::   .||.:...|
 Worm   166 EDQKALVMSEFGIAFIL-IEQAFKTAEDT---EEGCWILQNDTFLEISDTRNVQGQKRINSEFAD 226

  Fly   392 ELVTVM----KDVGIDDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESR 452
            .|...:    :.:.:|..|...:|.:|....:........|.:..|...:..|..| ..|::...
 Worm   227 FLFKTLSEPIRSLQLDKFECVVLKTMVLLSQSFPSQLYLPRFEENRKNCMKTLMKY-ELRKFPET 290

  Fly   453 G--RFGEILLILPVLQSITWQMIEQIQFAKIFGVAHIDSLLQEMLL 496
            |  |||||:|:|..::....|:....:.:.:|.|.:.|:..::.::
 Worm   291 GSQRFGEIILLLSSVRCAVKQLYNHTKRSDLFNVNNYDAFTRKYIV 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 29/74 (39%)
NR_LBD_HNF4_like 264..494 CDD:132729 53/254 (21%)
nhr-247NP_506798.1 NR_DBD_HNF4A 14..88 CDD:143518 29/74 (39%)
HOLI 144..308 CDD:214658 36/169 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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