Protein Alignment Hnf4 and nhr-256

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_503495.1
• Gene: nhr-256 / 191409
• WormBaseID: WBGene00022805
• Length: 431
• Species: Caenorhabditis elegans
• Alignment Length: 435
• Identity: 93/435 - (21%)
• Similarity: 159/435 - (36%)
• Gaps: 122/435 - (28%)

  Fly   170 CAIC-GDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKA 233
            |.:| ...||..|:||.||..|..||||:|:....|:|...:.|.::...|..||.|||.||.||
 Worm     6 CKVCDSPNATNFHFGAHSCKACAAFFRRTVKTGQIYSCPGEKTCEINHVFRQNCRQCRLAKCLKA 70

  Fly   234 GMKKEAVQNERDRISCRRTS--------NDDPDPGNGLSVISLVKAENESRQSKAGAAMEPNINE 290
            ||::|.||..:.....:|:|        :|..||     :...:::.::|.:|....|....|::
 Worm    71 GMQEELVQGHKMNGENKRSSPVDVIASTSDYYDP-----LQFPIQSTSQSSESYYPPAKSMKIDD 130

  Fly   291 DLSN---------------------------------------KQFASIN--------------- 301
            ||..                                       :||.::|
 Worm   131 DLMEIEELQHFIKIPNEPSLAVSPPIDVMEEEDRLYKLATLYIEQFVNLNMRRRLTYANVSLSAM 195

  Fly   302 ----DVC----ESMK------------QQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 346
                .||    ..||            .....::::..:.|.|:.|...::..|.:..|....|.
 Worm   196 FDNPCVCPFDLSDMKPLSYDTYRYKNRNDYTMILDYVNRFPEFHLLNKSEKTVLFQTTAAVDALA 260

  Fly   347 GLSRRSMHLKDVLLLSNNCVITRHCP----DPLVSPNLDISRIGARIIDELVTVMKDV------- 400
            .    ..:...|:.......:||...    ||:.|..|::......:.|  :|:.|:|
 Worm   261 D----PAYYSQVIYPDEPVFVTREAKYLKMDPMPSTELEVVPQDCNLED--ITIYKNVVLMIRRQ 319

  Fly   401 --GIDD---------TEFACIKALVFFDPNAKGLNEPHRIKSLRHQ--ILNNLEDYISDRQYESR 452
              .:::         .||:..|||..:..|...|....|..|.|.:  |...|.....|..|:..
 Worm   320 WKNVNEPLRKLKLSLAEFSLFKALAIWHYNYYKLQNTGRQISARQRDDIFRTLLLICEDEGYDDP 384

  Fly   453 -GRFGEILLILPVLQSITWQMIEQIQFAKIFGVAHIDS-LLQEML 495
             .|..||:|.:.::.|...:::..:....:|  |::|. :|::||
 Worm   385 ILRVSEIVLAVGIVMSEVHELVTTMFEITVF--ANVDDPILKDML 427

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	33/75 (44%)
		NR_LBD_HNF4_like	264..494	CDD:132729	53/329 (16%)
nhr-256	NP_503495.1	ZnF_C4	5..75	CDD:197701	30/68 (44%)
		HOLI	222..400	CDD:214658	35/183 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910