Protein Alignment Hnf4 and nhr-276

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_493446.2
• Gene: nhr-276 / 190581
• WormBaseID: WBGene00013512
• Length: 340
• Species: Caenorhabditis elegans
• Alignment Length: 358
• Identity: 72/358 - (20%)
• Similarity: 133/358 - (37%)
• Gaps: 65/358 - (18%)

  Fly   169 VCAICGDRATGKHYGASSCDGCKGFFRRSVRK----NHQYTCRFARNCVVDKDKRNQCRYCRLRK 229
            :|.||.:......||...|..|..||||:..:    |:........|........| |:.||..|
 Worm     5 LCQICSNPKCESKYGFFLCSACCSFFRRNFHEKSPPNYAAIMNKFFNLPCSPGHVN-CKKCRFDK 68

  Fly   230 CFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSKAGAAMEPNINEDLSN 294
            |.:.|:.:....|....::.            .|::::|::...:...::|......|:....|.
 Worm    69 CLEVGLIRPVTDNRAREMAA------------NLNLVNLIQTLKDLDITRADKFSNYNLIGPTSP 121

  Fly   295 KQFASI----------NDVCE--SMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLG 347
            .....|          |..|.  |:..| :|.:::.|:|.....:..:||.:::|:...:|:|..
 Worm   122 ADAILIPVKYSAKKLQNPTCHHWSLLNQ-ITTIDFLKKINFPQAINPEDQGSIIRSGYIKHMLFS 185

  Fly   348 LSRRSMHLKDVLLLSNNCVITRHCPDP--------LVSPNLDISRIGARIIDELVTVMKDVGIDD 404
            .:..|...|         :.....||.        |.:|... .|....|.:.||..:.::.:..
 Worm   186 TAFLSYTKK---------LGEMRFPDGSDIFDAEILKTPEFS-HRFLREIRELLVDKLANLKVTQ 240

  Fly   405 TEFACIKALVFFDPNAKGLNEPHRIK--SLRHQILNNLEDYISDRQYESR-GRFGEILLILPVLQ 466
            .|:..:..:......:..|:|..:.|  .::....:.|..|...:..:|. .||.|:|.|
 Worm   241 EEYLLLSVIFLCSEASPLLSEDGKAKLPCIQRMYASCLLHYCCLQNSKSAPARFTELLSI----- 300

  Fly   467 SITWQMIEQIQFAKIFGVAHIDSLLQEMLLGGE 499
               |.:|  :|..|.|  :|..:|:|  |:|.|
 Worm   301 ---WIVI--LQTFKNF--SHFVTLVQ--LIGKE 324

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	21/78 (27%)
		NR_LBD_HNF4_like	264..494	CDD:132729	47/252 (19%)
nhr-276	NP_493446.2	NR_DBD_like	5..78	CDD:295381	20/73 (27%)
		HOLI	151..300	CDD:214658	29/158 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910