DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-274

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001368290.1 Gene:nhr-274 / 189825 WormBaseID:WBGene00021522 Length:417 Species:Caenorhabditis elegans


Alignment Length:443 Identity:104/443 - (23%)
Similarity:169/443 - (38%) Gaps:96/443 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 AGGGSASSGSNNNNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASS 186
            :.|...:.|..:..|..||:.:..|:.:              |.....||:||||..||.|||.:
 Worm     2 SSGEVMTYGEIHRISTSSPDTSPPGTST--------------QDDTDGCAVCGDRVNGKRYGAPA 52

  Fly   187 CDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRR 251
            |.||..||||:|.....|.|.....||:..:.|..||||||:||:..|||..|:| .||.:..|:
 Worm    53 CLGCIVFFRRAVTNEVTYKCLKGGTCVITNESRCICRYCRLQKCYTVGMKASAIQ-RRDVMGPRK 116

  Fly   252 TSNDDPDPGNGLSVISLVKAE---------NESRQSKAGAAMEP--------------------- 286
            ....:          |:||.|         ..|..|..|:..|.                     
 Worm   117 PKIKE----------SIVKTEIIEEVPKLIMSSNPSSTGSMSEGPPKHKRPLLEDLVEVQRWQCS 171

  Fly   287 ------------NINEDLSNKQFASIN----------DVCESMKQQLLTLVEWAKQIPAFNELQL 329
                        |::.|||:..:..:|          ||...:|..|:....|..|...|..|..
 Worm   172 KHHSFFEAHEAINLDGDLSSMTYLKLNGTLHRRARARDVNSMLKLGLIDAATWGNQFDLFRRLST 236

  Fly   330 DDQVALLRAHAGEHLLL--GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGAR---- 388
            :::..:|.......:|:  |........|...||.|:..:  |....|..|..|..:..|.    
 Worm   237 EEKKHILTEFGFTFMLVDQGYKTAQKAEKGFWLLQNDTYM--HEDYFLGLPEEDARKENAATKAK 299

  Fly   389 ----IIDELVTVM----KDVGIDDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYIS 445
                .::|.:..:    |::.||:.|.|.:|.::.........:..:.:|.|....:..|..: |
 Worm   300 LHPLFVNESLNCVGYPFKNLQIDEHECAVLKTILLLTQQGVFKHCVNEVKHLYDCCMTELMGH-S 363

  Fly   446 DRQYESRG--RFGEILLILPVLQSITWQMIEQIQFAKIFGVAHIDSLLQEMLL 496
            .|:|....  |||.|:|:...::.....:..|.:.:.:|.:...|.|::::||
 Worm   364 QRKYPDTAAERFGTIILLTSSIRCAINALYNQTRVSDVFDLMKFDPLVRDVLL 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 37/74 (50%)
NR_LBD_HNF4_like 264..494 CDD:132729 55/297 (19%)
nhr-274NP_001368290.1 NR_DBD_HNF4A 36..111 CDD:143518 38/75 (51%)
HOLI 214..388 CDD:214658 36/176 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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