DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hnf4 and nhr-231

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_507672.2 Gene:nhr-231 / 189445 WormBaseID:WBGene00012449 Length:397 Species:Caenorhabditis elegans


Alignment Length:400 Identity:88/400 - (22%)
Similarity:156/400 - (39%) Gaps:95/400 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 QQQQSPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTC-RFARNCVVDKDKRNQCRYC 225
            |...:|..|.||.....|.|:|..:|..|..||||:|..|.:|.| :.:..|.|..:|.. |::|
 Worm     9 QLNYTPDKCEICQKTGHGHHFGLETCRACAAFFRRTVVLNRKYKCAQKSGKCDVGAEKAT-CKFC 72

  Fly   226 RLRKCFKAGMKKEAVQNERDRISCRRTSNDDPD---------PGNGLSVISLVKAENESRQSKAG 281
            |.:||...||..:.|:.| |.......|:..|:         ...|.|:  ||......|:||  
 Worm    73 RYKKCIDLGMTTDNVRAE-DITEQEPASSHLPEAQILYTISSKSRGSSL--LVDVNAVLRKSK-- 132

  Fly   282 AAMEPNIN----EDLSNKQF--ASINDV--CESMKQQLLTLVE-------WAKQIP--------- 322
            |.||.|.|    .||:..|.  .|::.:  .:|...:..|.::       ||:|:.         
 Worm   133 AIMEDNHNFYVAPDLNPLQMMVESLHKIRSKQSGSPEFFTTIKFGRKFQWWAEQLEDTATWLMNC 197

  Fly   323 -AFNELQLDDQVALLRAHAGEHLLLGLSRR-------------SMHLKDVLLLSNN--------C 365
             .|..|.:.:::|:.:      ::..:.||             ..:.:.:||.|:.        |
 Worm   198 REFRGLPIHEKLAIFK------IVWAVWRRFERYTMSAEVFGQKCYDEKILLHSHKFAARFGSYC 256

  Fly   366 VITRH--CPDPLVSPNLDISRIGARII---DELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNE 425
            |...|  ...|....|:    .|.::|   |.:|....::.:.:||...|...:.::...:.|..
 Worm   257 VDYSHVWSQGPHTFENV----FGGKMIRYFDIIVKPYLELNLSETEVTYILCQIVWNYAGRRLQG 317

  Fly   426 PHRIKSLR--HQILNNLEDYISD--------RQYESRGRFGEILLILPVLQSITWQMIEQ---IQ 477
            ..:....|  .:|.|||..|..:        :.|.||     :..::.::..:....::|   :.
 Worm   318 QTQAAGERFLEEISNNLHSYYEEAARKEENPKNYASR-----LTKMMQIVNEMLKMQLKQETDMD 377

  Fly   478 FAKIFGVAHI 487
            .|.:|.:.:|
 Worm   378 LALLFDMFNI 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 28/75 (37%)
NR_LBD_HNF4_like 264..494 CDD:132729 53/287 (18%)
nhr-231NP_507672.2 ZnF_C4 16..85 CDD:197701 26/69 (38%)
Hormone_recep 164..373 CDD:278530 35/223 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.