DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-132

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001379669.1 Gene:nhr-132 / 187822 WormBaseID:WBGene00003722 Length:400 Species:Caenorhabditis elegans


Alignment Length:398 Identity:94/398 - (23%)
Similarity:157/398 - (39%) Gaps:74/398 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 QSPTVCAICGDRATGKHYGASSCDGCKGFFRR--SVRKNHQYTCRFARNCVVDKDKRNQ--CRYC 225
            |:...|.:||..:.|.|:|..||..|..||||  :|.|.||..|:....|   |:...|  |:.|
 Worm     3 QNGPECEVCGLESQGFHFGVLSCRACSAFFRRTATVPKWHQKNCQKPSKC---KNGEGQYHCKPC 64

  Fly   226 RLRKCFKAGMKKEAVQNERDRISCR-------------------------RTSNDDPDPGNGLSV 265
            ||::|...||..|..|.:||.:..:                         .||....:|...:.|
 Worm    65 RLKRCIAVGMNTENFQFDRDGLVAKLKKPKLPKSFEMFVGRPEYVLFCTPGTSAQISNPKTLIDV 129

  Fly   266 ISLV-KAEN--------------ESRQSKAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLV 315
            ..|| ||.|              :..:...|.:...|.:.::.:...:|..||.:..:...||:.
 Worm   130 SGLVNKASNVLLTGPEIPIIARDQLHKLAIGFSFLENTSTNMKDFPHSSKEDVLKIWEFYFLTVA 194

  Fly   316 EWAKQIPAFNELQLDDQVALLRA------HAGEHLLLGLSRRS--MHLKDVLLLSNNCVI----- 367
            .|......|.:|....|:.||.|      ...:.|...::||.  ...|::|.|||...|     
 Worm   195 RWLTYFDEFQKLDHKIQMTLLLAIWHVWGRLDKLLATAINRRRGLCPTKNLLTLSNGVFIDMEHQ 259

  Fly   368 -------TRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTEFACIKA-LVFFDPNAKGLN 424
                   |.:.|:.:::   .|..:.||.:.:.:..:.::...|.|.|.:.| |.|.....:...
 Worm   260 EVDVDWMTNYEPEQVLT---FIDGVRARELTKEIDPLVELEPSDIESAYMLAQLCFHYAGKRFAG 321

  Fly   425 EPHRI-KSLRHQILNNLEDYISDRQYESR--GRFGEILLILPVLQSITWQMIEQIQFAKIFGVAH 486
            |...| ..|:..:..||.:|..:.:...|  ||..:::.|...:|...|:...:|:.:|.|.:..
 Worm   322 EIQEICDHLQDVLAQNLHEYYQNEKKIDRYSGRLAKLIKINGAVQKNIWENRSKIKISKTFDMLS 386

  Fly   487 IDSLLQEM 494
            |::...||
 Worm   387 IETSHPEM 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 30/78 (38%)
NR_LBD_HNF4_like 264..494 CDD:132729 56/268 (21%)
nhr-132NP_001379669.1 ZnF_C4 8..77 CDD:197701 28/71 (39%)
Hormone_recep 167..381 CDD:395054 45/216 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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