DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and dpr-1

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_506457.2 Gene:dpr-1 / 187759 WormBaseID:WBGene00001062 Length:356 Species:Caenorhabditis elegans


Alignment Length:348 Identity:75/348 - (21%)
Similarity:138/348 - (39%) Gaps:46/348 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 QLQQQQQQQSPTVCAICGDRATGK-HYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRN 220
            |....|..:....|.:|......: |:|:::|..|..||||:|....||.|:.:.||:|....|:
 Worm     3 QSNSDQTNEVARTCLVCTITENVRFHFGSTTCLACASFFRRTVSLKIQYVCKQSNNCIVSHAVRS 67

  Fly   221 QCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQS--KAGAA 283
            .||.||.:.|.|:|||...|:.:||.....:...:....|:.::|.:...:..|:...  |....
 Worm    68 GCRSCRFQNCLKSGMKTNMVRGKRDINKVPKYIRESMQQGDNMTVRNYTTSTLETLHGFPKQEEL 132

  Fly   284 MEPNINEDLSNKQFASINDVCE----------------------SMKQQLLTLVEW-AKQIPAFN 325
            ..|.:.||..|....|.:.:.:                      .:.||.....|: .|..|..:
 Worm   133 ELPVVKEDAPNLLIVSPDQLLDYYLDLNEKEPLPLSKIHLNTLGQLNQQNHVESEFICKNCPGTD 197

  Fly   326 ELQLDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARII 390
            .:..:|::.|::.....:|.|......:|.||.....|    ..||.:     ..|..|:.:..|
 Worm   198 LISTEDKMILIQYVKFANLWLDALWDELHAKDKQDKQN----LVHCGE-----FADYDRLFSTFI 253

  Fly   391 DELV----TVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQI---LNNLEDYISDRQ 448
            ..|.    ..:.::.:|..|::.:|:.|.:.......:...:|.:..|.:   ...:|.|.:::.
 Worm   254 SNLYESVGQFLCNLNLDIVEYSALKSFVIWKLGVVDFSITLKIVAQEHYLGVSAALIEYYKTEKN 318

  Fly   449 YESRG---RFGEILLIL-PVLQS 467
            .|...   ||.::.|:| |:..|
 Worm   319 MEEMEIAVRFADLTLLLGPIFNS 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 28/75 (37%)
NR_LBD_HNF4_like 264..494 CDD:132729 42/240 (18%)
dpr-1NP_506457.2 ZnF_C4 15..85 CDD:197701 27/69 (39%)
HOLI 190..338 CDD:214658 29/156 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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