DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-204

DIOPT Version :10

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001300163.1 Gene:nhr-204 / 187519 WormBaseID:WBGene00019816 Length:442 Species:Caenorhabditis elegans


Alignment Length:386 Identity:77/386 - (19%)
Similarity:140/386 - (36%) Gaps:110/386 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 PTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVD---KDKRNQCRYCRLR 228
            |:.|.:|..:|||.||..:||:|||.||||...:..:|.|.....|..:   .|...:||.||.:
 Worm    48 PSACQVCYGKATGHHYDVASCNGCKSFFRRVTIEKLKYRCSAGNACYTNFGPGDPVPKCRACRYK 112

  Fly   229 KCFKAGMKKEAVQNERDRISCRRTSNDDP------DPGNGLSVISLVKAENESRQSKAGAAMEPN 287
            :|.:|||....:|:|     .|:.|.:.|      :.|..:.|:..:|...:|.:::....:...
 Worm   113 RCLEAGMNALGIQSE-----LRKHSENQPLEENSSEFGKEIVVLPRIKEPPKSIEAQVTDLINHL 172

  Fly   288 INEDLSNKQF-------ASINDVCESMKQQ----------------------------------- 310
            ::.||....|       .|...:.:::|.:                                   
 Worm   173 MHLDLKITTFRDCTYNPMSFPTLKQAIKNEVSIIGLGDRLGPMPGWPLSPETIEASRKPNPNPGS 237

  Fly   311 ---------------LLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSRRSMHLKDVLL 360
                           |||:||.||....|.:|..:|:..|.|                   |..|
 Worm   238 PRILPPNVKKWFSYDLLTVVEMAKTFDFFKKLSENDRFFLCR-------------------DTSL 283

  Fly   361 LSNNCVIT-----------------RHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTEFA 408
            :.:|.:..                 ...|.|...|...:..:.:.|:...:..:..:.....|:.
 Worm   284 MVSNLMRAYFSVENKTDKFIRADGQTFVPPPKWIPKEYMDNLSSDIMMRAIKTLIRLACTKVEYL 348

  Fly   409 CIKALVFFDPNAKGLNEPHR--IKSLRHQILNNLEDY-ISDRQYESRGRFGEILLILPVLQ 466
            .::|::..:..|..::...|  :.:.|.:....|.:| ::.......|||.|||.::.||:
 Worm   349 FLRAILLCNSAAPDISASGRNILSTERAKYTVALLNYTMTHHGAAGPGRFAEILNVIDVLE 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 30/77 (39%)
NR_LBD_HNF4_like 264..494 CDD:132729 42/280 (15%)
nhr-204NP_001300163.1 ZnF_C4 51..122 CDD:197701 28/70 (40%)
HOLI 249..411 CDD:214658 34/180 (19%)

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