Protein Alignment Hnf4 and nhr-179

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_001256000.1
• Gene: nhr-179 / 184562
• WormBaseID: WBGene00017512
• Length: 440
• Species: Caenorhabditis elegans
• Alignment Length: 406
• Identity: 92/406 - (22%)
• Similarity: 128/406 - (31%)
• Gaps: 171/406 - (42%)

  Fly   145 SGSGSGTNSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNH-----QY 204
            |.|.|..|:|...|.:.........|.:|.....|.|:||.:|..|..||||:    |     :.
 Worm     6 SPSSSSQNNSLPSLVELGISLIHEKCRVCDQPGHGFHFGAFTCRACSAFFRRA----HFSLVTER 66

  Fly   205 TCRFAR-NCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISL 268
            .||.:. .||..|..|..|:.|||.||.:|||....:|.:||              .|..|::|
 Worm    67 KCRLSNGRCVPTKGGRWFCKKCRLAKCSEAGMNSRNIQYDRD--------------ANKTSLLS- 116

  Fly   269 VKAENESRQSKAGAAMEPNINEDLSNK-----QFASINDVCESMKQQLLTLVEWAKQIPAFNELQ 328
                            ..|:|.::.||     :||.|....||
 Worm   117 ----------------STNVNRNMKNKNAIPNKFALIYQTVES---------------------- 143

  Fly   329 LDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRI---GARII 390
                            |||:|..      ::||.|.       .:|...|.:|||.:   ....|
 Worm   144 ----------------LLGISNL------IILLENR-------SEPNACPVVDISLLVDKATNYI 179

  Fly   391 DELVTVMKD----------VGIDDTE--------------------------------FACIKAL 413
            ...|.:.||          :|:.|.:                                .||.|.:
 Worm   180 LNPVLIRKDGDMSNLEQLSLGLQDIQSSQKENVLEKKFITIADHMKQFEKAMCATAKWLACSKKI 244

  Fly   414 VFFDPNAKGLNEPHRIKSLRHQILN--NLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQI 476
            ..||.:.|       ||.||....|  .||...:..:...||..|:                ||:
 Worm   245 QSFDDDVK-------IKILRTVWFNWGRLEHMTATAKMRIRGSCGK----------------EQL 286

  Fly   477 QFA---KI-FGVAHID 488
            .|:   |: ||..|||
 Worm   287 MFSSDTKLNFGNVHID 302

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	29/80 (36%)
		NR_LBD_HNF4_like	264..494	CDD:132729	54/281 (19%)
nhr-179	NP_001256000.1	ZnF_C4	30..99	CDD:197701	27/72 (38%)
		HOLI	227..399	CDD:214658	25/99 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910