DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-178

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_503454.2 Gene:nhr-178 / 184560 WormBaseID:WBGene00017510 Length:421 Species:Caenorhabditis elegans


Alignment Length:450 Identity:97/450 - (21%)
Similarity:163/450 - (36%) Gaps:141/450 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 SGSNNNNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGCKGF 193
            |...:.:|..|||       ||||||:            |.|.:|...|.|.|:|.:||..|..|
 Worm     2 SSPPSTSSPSSPN-------SGTNSSE------------TTCKVCELSAHGVHFGVTSCRACAAF 47

  Fly   194 FRRSV--RKNHQYTCRFARN-CVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERD---------- 245
            |||::  .:..:|.||...| |:|:.:.|.|||.||..||...||..|.||..||          
 Worm    48 FRRTIVMSRTKKYRCRGGMNKCIVNTNDRYQCRLCRFNKCVTLGMTSENVQWNRDPFPEGRKKRD 112

  Fly   246 -------------------------------RI--------SCRRTSNDDPDPG-------NGLS 264
                                           ||        ..::..||...|.       |.|.
 Worm   113 GRGSEDEVDLKPVKRPTFTSSMLTPTITKPKRIVDVTLLAGKIQKILNDKKIPEHPRLKKLNNLE 177

  Fly   265 VISLVKAENESRQSKAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQL 329
            .:.|...|..|:|         .|||::......:|.::....:||::.:..|....|.|.:|:.
 Worm   178 RLELSLREWRSKQ---------KINEEMEEISKLTIEEMFVFCEQQMVIVATWLAHCPYFQKLES 233

  Fly   330 DDQVALLRAHAGEHLLLGLSRR----SMHLKDVLLLSNNCVITRHCPDPL----------VSPNL 380
            ..:..:.:      ::..:.||    .|.:|         :..|..|..:          |:|.|
 Worm   234 TLKYQMFK------VVWNVWRRFERVEMSVK---------MYERETPGEVMKFAISDKYYVTPKL 283

  Fly   381 --DISRI--------GARIIDELVTVMKDVGI-------DDTEFACIKALVFFDPNAKGLNEPHR 428
              |||::        |......:..:.:..|:       ...|.|.:.:.:.:...|:.|.  .:
 Worm   284 KIDISKVTNWPVPFMGGIFRRSIQNMFEQTGVPLAYLEPSSMEMAYMLSQLSWQLAAQALQ--GK 346

  Fly   429 IKSL----RHQILNNLEDYISD--RQYESRGRFGEILLILPVLQSITWQMIEQIQFAKIF 482
            :..|    :.::.|||.|:...  |:....||..:::.::..::.:..:....|:.|.||
 Worm   347 VMELAEAQQEELANNLHDHYLQIKRRSNYAGRLVKLMSVVNTVKKLHMERKIAIELANIF 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 32/77 (42%)
NR_LBD_HNF4_like 264..494 CDD:132729 43/255 (17%)
nhr-178NP_503454.2 ZnF_C4 23..95 CDD:197701 29/71 (41%)
Hormone_recep 193..397 CDD:278530 35/220 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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