DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-137

DIOPT Version :10

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001024506.1 Gene:nhr-137 / 183865 WormBaseID:WBGene00003727 Length:432 Species:Caenorhabditis elegans


Alignment Length:402 Identity:97/402 - (24%)
Similarity:153/402 - (38%) Gaps:114/402 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 NNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQ-SPTVCAICGDRATGKHYGASSCDGCKGFFRRS 197
            :||..:||:..|.|.|.::|.:..:.|.:::: ....||:|...|||.||..:||:|||.||||.
 Worm    30 SNSWSTPNSTPSPSLSKSSSPKPTVSQAKERRVFDLPCAVCLYPATGYHYNVASCNGCKTFFRRC 94

  Fly   198 VRKNHQYTC-RFARNCVVD----KDKRNQCRYCRLRKCFKAGMKKEAVQ-----NERD------- 245
            |.....|.| |...||:::    ...|.:||.|||.:|.:.||:||||.     ||..       
 Worm    95 VLSGSSYRCIRGDSNCLLNMRLVAGARIKCRSCRLDRCLQQGMRKEAVTSGIVGNEEKVAPQTAY 159

  Fly   246 --RISCRRTSNDDPDPGNGLSVISLVKAENESRQS--------KAGAAME------------PNI 288
              .||...||...|......|.:         ||:        |....:|            |:.
 Worm   160 LASISLPSTSTAIPKVTETASCL---------RQTLRLITKFRKCNIIVEKIDLHISALLTMPSF 215

  Fly   289 NEDLSNKQFAS--INDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHA----------- 340
            .::|:|.|..:  ..|:.|.....||..:|:||::|..::....|:..|:|...           
 Worm   216 LDNLNNYQEETDFKRDLPEWCTIDLLCAIEFAKKLPDLSKFSDSDKEELIRNSCFTIAIAIEAIE 280

  Fly   341 -------------GEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDE 392
                         |..::..|:.....:..|......|::     |||...:.        .|||
 Worm   281 SYFDKKKTVVMPDGTDVMQSLANSGSVIHAVFTQMFVCIL-----DPLHRESF--------TIDE 332

  Fly   393 LVTVMKDVGIDDTEFACIKALVFF--------DPNAKGLNEPHRIKSLRHQILNNLEDYISDRQY 449
            ||..::              |:||        .|..|...| ..:||..|.::..|   |:....
 Worm   333 LVLTLQ--------------LLFFTIAAPENLTPEGKEQLE-KSVKSSMHCLMVLL---ITQNTT 379

  Fly   450 ESRGRFGEILLI 461
            ....|:|.::.:
 Worm   380 NFSARYGSLIAL 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 38/84 (45%)
NR_LBD_HNF4_like 264..494 CDD:132729 45/252 (18%)
nhr-137NP_001024506.1 NR_DBD_like 67..142 CDD:143512 34/74 (46%)
NR_LBD 234..389 CDD:472173 35/185 (19%)

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