Protein Alignment Hnf4 and nhr-171

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_504934.2
• Gene: nhr-171 / 183807
• WormBaseID: WBGene00016926
• Length: 386
• Species: Caenorhabditis elegans
• Alignment Length: 350
• Identity: 80/350 - (22%)
• Similarity: 146/350 - (41%)
• Gaps: 75/350 - (21%)

  Fly   169 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCV-VDKDKRNQCRYCRLRKCFK 232
            ||.:|...|..::|||.||:.||.||||.:.:...|.|:...||. ..|..|.:||.||.::|.:
 Worm    54 VCTVCRRPAFTRYYGAVSCEACKMFFRRMIIEKLSYDCKKINNCYETSKGTRFKCRSCRFKRCLQ 118

  Fly   233 AGMK--------KEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSK---AGAAMEP 286
            .|||        .|...|:.|.::               ::::.:|..:|.|..:   .....:|
 Worm   119 MGMKLPPSNYTTLELKDNKIDELA---------------NLLTDLKLRDEKRCDRFMTFYTTTDP 168

  Fly   287 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFN------------ELQLDDQVALLRAH 339
            ::::.||....     |.........|.:||: .:.|:|            :|..||::.|.:|:
 Worm   169 SLHDILSKNTI-----VVHEQNDHTTTTIEWS-FLAAYNIIEYFTSFHFIDKLNNDDKMKLFQAN 227

  Fly   340 A-GEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLV-----SPNLDISRIGARIIDELVTVMK 398
            : ..::..|..|.....:|.::......|   .|:.||     ||.| :.|:..::|..|:
 Worm   228 SFRSNIFCGGMRGYKEKRDKMVTPGGQEI---LPEILVKLLNTSPQL-LRRVCCQVIARLI---- 284

  Fly   399 DVGIDDTEFACIKALVFFD------PNAKGLNEPHRIKSLRHQILNNLEDYIS-DRQYESRGRFG 456
            ::.|.:.||..:..:.||:      .:||.     .:.|.:....|.|..|.. ..::.:..|..
 Worm   285 ELEITNEEFVLLNLIFFFNTVDSMSDSAKS-----TLGSWQKLYTNALFQYCQLTYKHRAPSRLV 344

  Fly   457 EILLILPVLQSITWQMIEQIQFAKI 481
            ::|.:..::|..|    .:||:..|
 Worm   345 DLLSLYQIVQKNT----SEIQYIGI 365

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	30/83 (36%)
		NR_LBD_HNF4_like	264..494	CDD:132729	47/245 (19%)
nhr-171	NP_504934.2	ZnF_C4	55..122	CDD:197701	26/66 (39%)
		HOLI	195..355	CDD:214658	33/173 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910