DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-164

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001309454.1 Gene:nhr-164 / 183381 WormBaseID:WBGene00008056 Length:373 Species:Caenorhabditis elegans


Alignment Length:391 Identity:87/391 - (22%)
Similarity:155/391 - (39%) Gaps:89/391 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 LSGSGSGTNSSQQQLQQQQQQQSPT---VCAICGDRATGK-HYGASSCDGCKGFFRRSVRKNHQY 204
            ::||....|...|...:..:..|.|   |||:||.....: |:|...|..|..||||:|..|.:|
 Worm    13 MNGSDESENQYAQHYVEFLETMSYTKFGVCAVCGFSCQVQYHFGGVVCGACSAFFRRTVSLNIRY 77

  Fly   205 TCRFARNCVVDKDKRNQCRYCRLRKCFK-AGMKKEAVQNERDRISC-------RRT--SNDD--- 256
            .|.....|   |....:||.||...|.| ||||:..|:.::..|..       |.|  .|:|   
 Worm    78 LCDGDNQC---KSMLKKCRACRFESCVKTAGMKRSLVRRKKPTIKTTPLYIKNRETHVRNEDVLR 139

  Fly   257 --------PDPGNGLSVISLVKAENESRQSKAGAAMEPNINEDLSNK-QFA---SINDVCESMKQ 309
                    |.|.|       ...|::.:.|:.......||.:...|: ::|   :.|.......:
 Worm   140 AFIPSYTHPSPAN-------ETVEDKGKFSEKLKLSHGNILKFYINQVRYAKRKNTNIFTIKTTE 197

  Fly   310 QLLTLVEWAKQI-----PAFNELQLDDQVALLRAHAGEHLLLGLSRRSMHLKDVLL-------LS 362
            ..:.||.:.::|     .:|..::|.|:..:|           :.|:.:....|.:       ::
 Worm   198 DFMRLVNFQRKIADETCSSFPGVELIDENNIL-----------ILRKYLQFSSVWIESTWTYWIT 251

  Fly   363 NNCVITRHCPDPLVSPNLDISRIGARIIDE----LVTVMKDVGIDDTEFACIKA-----LVFFDP 418
            |:.|..         .|:::.:....:|:.    |:..:..:.::..|||..|:     |||...
 Worm   252 NSSVSV---------DNMEMDKRLKELIEHVKSTLLISLSQLKLNIFEFAAFKSFFVWKLVFHKT 307

  Fly   419 NA--KGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQIQFAKI 481
            :.  |.:.:.| .:.:...:.:..:.|.|....|...|.|||.|:|    |:.:|:...:  ||:
 Worm   308 SVAMKTIGQEH-YECVSSALKSYYQTYTSMDSTEIAVRIGEITLLL----SLVFQIYHDM--AKL 365

  Fly   482 F 482
            :
 Worm   366 Y 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 29/76 (38%)
NR_LBD_HNF4_like 264..494 CDD:132729 43/246 (17%)
nhr-164NP_001309454.1 ZnF_C4 42..109 CDD:197701 28/69 (41%)
HOLI 212..358 CDD:214658 30/170 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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