DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-162

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_504769.1 Gene:nhr-162 / 183181 WormBaseID:WBGene00016367 Length:347 Species:Caenorhabditis elegans


Alignment Length:379 Identity:83/379 - (21%)
Similarity:132/379 - (34%) Gaps:99/379 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKA 233
            :|.:||......|:|..||..|..||||.|   |......:..|.......:.||:||:.||...
 Worm     2 LCQVCGAEGPEPHFGGISCRACAAFFRRYV---HSRKLDISCTCKHRLATSHPCRHCRMLKCMAT 63

  Fly   234 GMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE-------------------NESRQSK 279
            ||.|..||..|::.....:|.    ||: :|.|||:.|.                   .:.|:..
 Worm    64 GMVKCKVQGSREKNKITTSSL----PGH-ISSISLLSARIVPRDCSNISCTVSKWTKVEKMRKDL 123

  Fly   280 AGAAM-EPNINE-------------DLSNKQFASINDVCESMKQQLLT--LVEWAKQIPAFNELQ 328
            .|..: |.|..:             ||..|.|..:..:.|:.|..:|.  ...|         :.
 Worm   124 YGEKICEINFTQFSSFVKRDTHLLWDLGEKIFTDVKLLSEADKHSILCNFFPRW---------MM 179

  Fly   329 LDDQVAL----------LRAHAGEHLLLGLSRRSM----HLKDVLLLSNNCVITRHCPDPLVSPN 379
            ||..||:          :::.....:||.....||    .|||..:|.            :..|.
 Worm   180 LDSAVAICPDYEESKAYIKSKDYTDMLLHFYGSSMPKEKRLKDHEILK------------IFKPY 232

  Fly   380 LDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEP--HRIKSLRHQILNNLED 442
            .|....      |....:....:|..|:..|..|:.||.....::|.  ...:::|..:...|:.
 Worm   233 WDFHYY------ETAVPIHFKKLDKIEYMAIFLLLLFDDAYTNISEEGVKLCQNVRKVVQRELKG 291

  Fly   443 YISDRQYESRGRFGEILLILPVLQSITWQMIEQI------------QFAKIFGV 484
            |.:|...:.. ||.|.:..|.:|:....::.|::            .|..||.|
 Worm   292 YQTDSNCDEM-RFVETMDTLLLLEKAEEKIQEEVLICGFNNVTLHEDFRTIFQV 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 26/74 (35%)
NR_LBD_HNF4_like 264..494 CDD:132729 53/284 (19%)
nhr-162NP_504769.1 ZnF_C4 2..65 CDD:197701 21/65 (32%)
Hormone_recep 121..323 CDD:278530 42/229 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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