DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hnf4 and nhr-157

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_504067.1 Gene:nhr-157 / 182730 WormBaseID:WBGene00015900 Length:366 Species:Caenorhabditis elegans


Alignment Length:393 Identity:95/393 - (24%)
Similarity:159/393 - (40%) Gaps:120/393 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 NNNSMF---SPNNNLSGSGSGTNSS--QQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGCKG 192
            :|.|:|   ||:|      |...||  .|.|||::       ||||...|...:||..:||.||.
 Worm    10 HNMSVFDTPSPSN------SSLESSPFSQDLQQKK-------CAICFRPAFSNNYGVLTCDACKM 61

  Fly   193 FFRRSVRKNHQYTCRFARNCV-VDKDKRNQCRYCRLRKCFKAGMKKE----AVQNERD------- 245
            |:||.|..|.:|.|::...|. |.|....:|:.||.::|.:|||..:    .:.||:|       
 Worm    62 FYRRIVILNREYKCKYGGGCAHVAKSTVVKCKGCRYQQCLEAGMTFQPSFAELTNEKDFDAATTV 126

  Fly   246 ---------RISCRRTSNDDPDPGNGLSVISLVKAENESRQSKAGAAMEPNINEDLSNKQFASIN 301
                     |.:..:|...|.|    .|::.::    |.|:.|..|.     ..:::|.:::...
 Worm   127 ATLRFLDSRRSNAMKTQFTDED----FSLLEVL----EKRRMKMKAR-----RSEITNHEWSFFG 178

  Fly   302 DVCESMKQQLLTLVEWAKQIPAFNELQLD--DQVALLRAHAGEHLLLGLSRRSM-HLKDVLLLSN 363
                     :.|.:|:...:...:.|.|:  |:..||:.:..:..|...:.|:| ..::.|:..:
 Worm   179 ---------IYTSIEFLMSLDFMSSLNLNIQDKKILLKHYCVKASLFASAMRAMKEQRNTLMTVD 234

  Fly   364 NCVITRHCPDPL-----VSPNLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGL 423
            ...|   .||.:     :||.. :.||.:.::.:|:    ::.|.|.|||.:.| :||...|..|
 Worm   235 GKEI---YPDAILRLKQISPQF-LQRIRSLLVMKLI----ELKITDEEFALVNA-IFFCNAALPL 290

  Fly   424 NE-----------------------------PHR---IKSLRHQILNNLED----------YISD 446
            :|                             |.|   :.||.|.|..|.||          ::.|
 Worm   291 SEDGQKTVVTQQKAYSSALLQFCNVESSRNGPTRFTNLLSLLHVINKNFEDVKAMTMLFRIFVKD 355

  Fly   447 RQY 449
            ..|
 Worm   356 VSY 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 30/79 (38%)
NR_LBD_HNF4_like 264..494 CDD:132729 47/236 (20%)
nhr-157NP_504067.1 ZnF_C4 38..106 CDD:197701 27/74 (36%)
HOLI 175..337 CDD:214658 36/179 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.