DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-152

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_504990.2 Gene:nhr-152 / 182533 WormBaseID:WBGene00015705 Length:383 Species:Caenorhabditis elegans


Alignment Length:367 Identity:92/367 - (25%)
Similarity:131/367 - (35%) Gaps:119/367 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQ----CRYCR 226
            ||..|.||...|.|.|...::|.|||.||||......:..|....:| .|.|||.:    ||.||
 Worm    17 SPFNCKICNRPAHGHHCDVATCKGCKTFFRRMYLLKSELRCYINSDC-FDLDKRTEPLLRCRACR 80

  Fly   227 LRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSKAG---------- 281
            .:||...||...|       ::.|.|.|             |.::...|::.|..          
 Worm    81 FKKCLLVGMNPNA-------LNFRTTKN-------------LTQSLKNSKEEKIKDVINELTYLD 125

  Fly   282 --------AAMEPNINE--------------DLSNK-------------QFASIN------DVCE 305
                    :|..||..|              .||||             .|||.|      ....
 Worm   126 CKLEQFRLSAYNPNWTEIGGLEDLLRCSSKLSLSNKFGPFPGWPYHPNHIFASSNLDYNFKTYSP 190

  Fly   306 SMKQ----QLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCV 366
            ..||    .|||.:|:.|..|.|.:|...||:.|:|     |:::|.|  ::| .....|.|...
 Worm   191 HRKQWRFFNLLTSIEFLKTFPFFLKLDTKDQLILMR-----HVVVGCS--NLH-SAYYTLKNKYE 247

  Fly   367 ITRHCPDPLVSPNLDISRIG--ARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHRI 429
            ..|. ||....|.....:..  |.:...|:.    ||:...|:..:|.:...:|....|:     
 Worm   248 DLRQ-PDGTQRPKKSEPQYSTFAMVFYALMR----VGVHYIEYLLLKMIFICNPAIPNLS----- 302

  Fly   430 KSLRHQILNNLEDYISDRQYE-SRGR--FGEILLILPVLQSI 468
                           |:.||: .:||  :.|:||:. .|||:
 Worm   303 ---------------SNAQYKLEKGRSFYSEMLLVY-CLQSL 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 29/78 (37%)
NR_LBD_HNF4_like 264..494 CDD:132729 58/265 (22%)
nhr-152NP_504990.2 ZnF_C4 20..92 CDD:197701 28/72 (39%)
HOLI 197..349 CDD:214658 41/166 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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