DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hnf4 and nhr-150

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_506854.1 Gene:nhr-150 / 182297 WormBaseID:WBGene00007367 Length:342 Species:Caenorhabditis elegans


Alignment Length:394 Identity:87/394 - (22%)
Similarity:154/394 - (39%) Gaps:114/394 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 VCAICGDRATGKHYGASSCDGCKGFFRR---SVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKC 230
            :|.:||......|:|..||..|..||||   |.:::.:.||   :..::|.   :.||.||:.||
 Worm     1 MCQVCGAAEADLHFGGISCRACAAFFRRFFLSKKQSKKCTC---KTRILDS---HPCRSCRILKC 59

  Fly   231 FKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSKAGAAMEPNIN------ 289
            |:|||..:.:|:.||:.|.:              .||.:..|:.|....|......::|      
 Worm    60 FEAGMTSKKIQSGRDKTSTK--------------AISCISTESTSNSLSARIIPRSSLNIHGAVH 110

  Fly   290 --EDLSNKQFASINDVCESMKQQLLTLVE----------WAKQIPAFN---ELQLDDQVALLRAH 339
              ::..|.:      .|:...::...:|.          |...|..|:   ||::.|:.||||  
 Worm   111 LWQEFENTR------ACKKGTKRNALIVSTSSAGDMDSTWKMVINLFSSLGELEIKDKTALLR-- 167

  Fly   340 AGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDI-SRIG-----ARIID------- 391
                   ....:.:.:..|               |..:.|:|: ..||     :.|||       
 Worm   168 -------NFMPKFIQIDSV---------------PYFAANIDVFKNIGRDEYESSIIDFYDGVLP 210

  Fly   392 ELVTVMKD-----------------------VGIDDTEFACIKALVFFDPNAKGLNEPHR--IKS 431
            |..|:.|.                       :.::..||..:..|:|||.....|::..|  .::
 Worm   211 ETNTISKKDTIRIFEPYWNFYTNKVILPIALMKLEGPEFMALVWLLFFDNGYTNLSDKCREACRN 275

  Fly   432 LRHQILNNLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQIQFAKIFGVAHIDSLLQEMLL 496
            ::..||..|..|..||.:: |.||.|||..|.:::....:.:|::...::..: .||....|::.
 Worm   276 IKKVILRELRSYQIDRNFD-RNRFFEILEALQLVERGEKKFMEEMVICELLNI-KIDPGFMEIIR 338

  Fly   497 GGEL 500
            ..:|
 Worm   339 ESKL 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 27/77 (35%)
NR_LBD_HNF4_like 264..494 CDD:132729 55/288 (19%)
nhr-150NP_506854.1 ZnF_C4 2..65 CDD:197701 25/68 (37%)
HOLI 139..310 CDD:214658 43/195 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.