DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-14

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_741860.2 Gene:nhr-14 / 181102 WormBaseID:WBGene00003613 Length:435 Species:Caenorhabditis elegans


Alignment Length:369 Identity:127/369 - (34%)
Similarity:198/369 - (53%) Gaps:46/369 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKC 230
            |...|.:|||:|.||||||.:|:||||||||||.:|.||||||.:.|.:|||.||.|||||.:||
 Worm    16 SADFCVVCGDKAIGKHYGAVACNGCKGFFRRSVWQNLQYTCRFNKQCNIDKDHRNACRYCRFQKC 80

  Fly   231 FKAGMKKEAVQNERDRI-SCRR--------TSNDD----PDP-----GNGLS---VISLVKAENE 274
            ...|||.||:||||||| |.:|        .:|.|    |.|     ||.:|   :..|:..|:.
 Worm    81 LADGMKPEAIQNERDRIGSTKRRKRSGANSENNSDSEGTPSPKIEVMGNSVSRKLIEMLLDIEHR 145

  Fly   275 SRQSKAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAH 339
            ...:::..|:..:.:| :.|.:..::|           .|:.|...:....|:.|.|:|.||:..
 Worm   146 LASNQSMNALLRDESE-MKNSRQRAVN-----------YLIGWTNMLHPLPEVPLADKVLLLKKF 198

  Fly   340 AGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDD 404
            :....|||..:|||.|.. .:|.|:.|::.....|   |  ::.....||||||:|.::.:..|.
 Worm   199 SSAFTLLGTLQRSMALPH-FVLPNDQVLSISASHP---P--ELFEALTRIIDELLTPLRRLRTDH 257

  Fly   405 TEFACIKALVFFDPNAKGL--NEPHRIKSLRHQILNNLEDYISDRQ--YESRGRFGEILLILPVL 465
            .||:|:|||:..:|:..|:  |...||:..|..:|..|..|:|:.|  .::..|...:|:|:|.|
 Worm   258 AEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAYMSNTQNSIDASLRVSSLLMIIPSL 322

  Fly   466 QSITWQMIEQIQFAKIFGVAHIDSLLQEMLLGGELADNPLPLSP 509
            .|::..::|....:.:||:..:   ::...:..::...||.:.|
 Worm   323 ISVSSSIMEFPALSDLFGLGDV---IKRDTISPKIETPPLEMKP 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 50/74 (68%)
NR_LBD_HNF4_like 264..494 CDD:132729 61/236 (26%)
nhr-14NP_741860.2 NR_DBD_HNF4A 20..95 CDD:143518 50/74 (68%)
HOLI 176..322 CDD:214658 48/151 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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