DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-95

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001024229.1 Gene:nhr-95 / 180254 WormBaseID:WBGene00003685 Length:509 Species:Caenorhabditis elegans


Alignment Length:426 Identity:92/426 - (21%)
Similarity:148/426 - (34%) Gaps:119/426 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 PTVCAICG-DRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQ----CRYCR 226
            |..|.||. .:..|.|:|.:||..|..||||:|............:|       ||    |:.||
 Worm    11 PQKCEICKIQKCHGNHFGVNSCRACAAFFRRTVNSKWSRMRCLGGSC-------NQISFLCKPCR 68

  Fly   227 LRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVK--------------AENESRQ 277
            |::||..||.....|..|| :.|..    ||.|     .:|:.|              :|..|.:
 Worm    69 LQQCFNGGMMTNNFQYNRD-VICPM----DPQP-----TVSIPKSLEIYLGKPYFVMLSEKNSEK 123

  Fly   278 SK------------------------AGAAMEPNINEDLSNKQFASINDVCESM-KQQLLT---- 313
            ::                        ||..:: .::..|.|:..|....:.|.: |.:|:.    
 Worm   124 TEIDLHRLLGEASKILSQGSASPSFCAGNQLK-KLSLGLPNQIIAPRFKMAEKVAKAELVANWEY 187

  Fly   314 ----LVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSRRSMHLK-----------DVLLLSN 363
                :..|......|..|.:|.|:.||::.  .|:...|.:.|...|           ||:|..:
 Worm   188 YVKKVAAWLAHFDDFRRLDVDLQMKLLQSI--WHIWSRLEKLSATAKYRKTAQSYKKTDVVLQGD 250

  Fly   364 NCVITRHC-PDPLVSPNLDISRIGARIID------ELVTVMKDVGIDDTEFACIKALVFFDPNAK 421
            ..|...|. .|.....|..:.:....:|.      ::...:.|:...|.|...:.|.:.|  ...
 Worm   251 IVVDVEHVYMDTRWLSNFPLEQFRRFMIHSSCDQYDVTQALYDLSPTDIELTYMLAQLCF--QYA 313

  Fly   422 GLNEPHRIKSLRHQIL----NNLED-YISD-RQYESRGRFGEILLILPVLQSITWQMIEQ----- 475
            |.....||..:..:.|    |:|.| ||.| ......||..:::.:...:|.|..|.:.|     
 Worm   314 GNRYQGRILEVCDRFLTVLSNDLHDYYIKDLGMLRYAGRLAKMMQVNNSIQKILCQKLAQQLPGP 378

  Fly   476 ---------------IQFAKIFGVAHIDSLLQEMLL 496
                           .|: :||.....|.||::.:|
 Worm   379 KFYITPVQKSTKFQNFQY-RIFIDKPYDELLEKYVL 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 26/79 (33%)
NR_LBD_HNF4_like 264..494 CDD:132729 58/320 (18%)
nhr-95NP_001024229.1 ZnF_C4 13..80 CDD:197701 25/73 (34%)
Hormone_recep 168..366 CDD:278530 40/201 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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