Protein Alignment Hnf4 and nhr-54

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_507179.3
• Gene: nhr-54 / 180106
• WormBaseID: WBGene00003644
• Length: 422
• Species: Caenorhabditis elegans
• Alignment Length: 412
• Identity: 84/412 - (20%)
• Similarity: 149/412 - (36%)
• Gaps: 110/412 - (26%)

  Fly   170 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTC-RFARNCVV--DKDKRNQCRYCRLRKCF 231
            ||||.....|:|:|..:|..|..||||:|..|.:|.| |.:..|.:  |:.|...|::||.:||.
 Worm    17 CAICYKAGHGQHFGVETCRACAAFFRRTVVLNRKYKCTRKSGKCKIGSDETKDVMCKFCRFKKCI 81

  Fly   232 KAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSK-----------AGAAME 285
            ..||..|.|:.  |::.   ..|.:|.....|..:.:...:.|:..|.           .|.|:.
 Worm    82 DLGMTTENVRT--DQVI---NLNVEPSTSQSLVRLEMTSLQPETDDSNRVQYQIIHPRTRGPAIL 141

  Fly   286 PNIN----------------------------------EDLSNKQ------FASIN--DVCESMK 308
            .::|                                  ..|.:||      |..||  |:.|..:
 Worm   142 IDVNAIIKRSKTILETHFFPDDDVIVELNPLEKMTFCLRKLRSKQSWNPNFFTKINFLDLFEFWE 206

  Fly   309 QQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPD 373
            .|:.....|......|.:|...:::|:.:      ::..:.||   |:...:.:.  |..:.|.|
 Worm   207 SQMEDTATWLMYSGEFRKLPNHEKIAIFK------IVWAVWRR---LERYTMTAQ--VFGQKCYD 260

  Fly   374 P--LVSPNLDISR----------------------IGARII---DELVTVMKDVGIDDTEFACIK 411
            .  |:..:.|.:|                      .|.::|   |.:|....::.:.|||.|.|.
 Worm   261 EQILLHSHQDAARFTDYDVDYSYITDQGFEKINGLFGGKMIQYFDIIVKPYLELELSDTEIAYIL 325

  Fly   412 ALVFFDPNAKGLNEPHRIKSLR--HQILNNLEDYISDRQYESR---------GRFGEILLILPVL 465
            ..:.::...:.|....:....|  ..|.|||..|..|:....:         .|..:::.|:..:
 Worm   326 CQIVWNYAGRRLQGQTQAAGERFLEVISNNLHKYYEDKSGNRKRAEDKQNYVARLAKMMQIVNQM 390

  Fly   466 QSITWQMIEQIQFAKIFGVAHI 487
            .:...:|...:..|.:|...:|
 Worm   391 LNAQLKMENTMDVAMLFNTFNI 412

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	30/77 (39%)
		NR_LBD_HNF4_like	264..494	CDD:132729	50/315 (16%)
nhr-54	NP_507179.3	ZnF_C4	16..88	CDD:197701	28/70 (40%)
		Hormone_recep	186..399	CDD:278530	40/223 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910