Protein Alignment Hnf4 and nhr-102

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_506967.1
• Gene: nhr-102 / 180062
• WormBaseID: WBGene00003692
• Length: 414
• Species: Caenorhabditis elegans
• Alignment Length: 434
• Identity: 97/434 - (22%)
• Similarity: 155/434 - (35%)
• Gaps: 125/434 - (28%)

  Fly   149 SGTNSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGCKGFFRRSV--RKNHQYTCRFAR- 210
            |..::|....:......|..:|.:||..|.|.|:|..:|..|..||||:|  .:..:|.||...
 Worm     3 STPSTSDTSSETSTSPASTAICKVCGLCAHGLHFGVLACRACAAFFRRTVVMERQKKYKCRGGED 67

  Fly   211 NCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPD--PGNGLSVISL----- 268
            ||.|....|.|||.||..||.:.||..|.||..||.|...|...||..  |.|.|..::.
 Worm    68 NCAVSSTDRYQCRLCRFNKCVELGMTPENVQWNRDSIPTSRKRKDDGPIVPANDLKAMAYPDGSL 132

  Fly   269 --------------VKAENESRQSKAG---AAMEPNINE--DLSNKQFASINDVCESM------- 307
                          .|.:|...:.|.|   |..:.|..|  |.:.:::.::....|.|
 Worm   133 FGKPRTIMDISTLSAKIKNILNEDKGGIDPATKKMNTLEIADYALRKWRNLQRSEEKMEKLDKLP 197

  Fly   308 --------KQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSRRSMHLK-DVLLLSN 363
                    ::|::.:.||..|.|.|..|.|:::....:|      :..:.||....: .|.:..|
 Worm   198 VRQMFAIFEKQMIVVAEWLVQNPDFRLLSLEERYIYFKA------MWNMWRRFERFEMSVKMFGN 256

  Fly   364 NCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNE--P 426
            :.|..|         ...||.      |:::|  |:..||.:|...:       ||.. :.|  .
 Worm   257 DVVEIR---------KFAISN------DQILT--KEFTIDFSEITDV-------PNTT-VQEMFR 296

  Fly   427 HRIKSLRHQI---------------------------------------------LNNLEDYISD 446
            |.:..:.||:                                             .|||..|...
 Worm   297 HSMSKMHHQVAKPLLELRPSSIETAYMLTQMSWQVAGKKMQGKVVEIGERVCDELANNLHSYYLK 361

  Fly   447 RQYESR--GRFGEILLILPVLQSITWQMIEQIQFAKIFGVAHID 488
            .:..|.  ||...::.::..::.|..:....::.|:||.|..:|
 Worm   362 EEMRSNYAGRLVRLMSVVNSVKKIHMERSMTMELARIFEVFKVD 405

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	33/77 (43%)
		NR_LBD_HNF4_like	264..494	CDD:132729	52/314 (17%)
nhr-102	NP_506967.1	ZnF_C4	23..95	CDD:197701	30/71 (42%)
		Hormone_recep	186..389	CDD:278530	39/233 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910