DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-42

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_504771.1 Gene:nhr-42 / 179084 WormBaseID:WBGene00003632 Length:356 Species:Caenorhabditis elegans


Alignment Length:398 Identity:96/398 - (24%)
Similarity:141/398 - (35%) Gaps:125/398 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 QQQSPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRL 227
            :|.:...|.||||.|...|:||.||..|..||||.|........|..|.|.||...|..|..||.
 Worm     3 RQTTSQTCLICGDSADSLHFGALSCRACAAFFRRKVAGRRNIFRRCDRQCKVDTGMRKLCASCRY 67

  Fly   228 RKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSKAGA--AMEPNINE 290
            .||.|.||::.||.:.                        |.|.....::|..|:  |.||:.  
 Worm    68 DKCLKVGMRESAVLSR------------------------LAKKNQNYKKSIVGSPDAYEPST-- 106

  Fly   291 DLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLD-------------DQVALLRAHAGE 342
                   ::.:.|.|:::.....|.|..|::...:|..:.             :.:.|:.    |
 Worm   107 -------STSDSVLENLQSAYHKLEETRKRVFNISETHVSQCCNYKRMNDVFFEDIKLVM----E 160

  Fly   343 HLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLV-------SPNLDISRI-GARIIDE------- 392
            |||....:..:..:...||   ||   |...|.:       |.|.|:..: ....|||       
 Worm   161 HLLETFKKSDISQEQEKLL---CV---HFMVPFILFEGGYKSTNSDLFYLPSGDFIDENRIEEYY 219

  Fly   393 ----------------------------LVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEP--H 427
                                        |.|.:.||.:|..||..|.||::||......||.  .
 Worm   220 SNPDDQNDNSAKSAAEVFRPYWKLNKQTLKTHLDDVQLDLPEFLFITALIYFDDGLLDQNEECIE 284

  Fly   428 RIKSLRHQILNNLEDY------ISDRQYESRGRFGEILLILPVLQSITWQMIEQIQ--------- 477
            ..|.::.:|:..|.||      ..|..|    |.|:|:::|..:|. |..||.:.:         
 Worm   285 VCKQMKAKIIEELTDYEKNVRINEDHSY----RVGQIIMVLHGIQR-TMNMIHETKEISLVYNVY 344

  Fly   478 --FAKIFG 483
              .:.|||
 Worm   345 DMHSSIFG 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 33/74 (45%)
NR_LBD_HNF4_like 264..494 CDD:132729 62/297 (21%)
nhr-42NP_504771.1 ZnF_C4 9..78 CDD:197701 31/68 (46%)
HOLI 151..327 CDD:214658 43/190 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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