DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-103

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_503607.1 Gene:nhr-103 / 178701 WormBaseID:WBGene00003693 Length:394 Species:Caenorhabditis elegans


Alignment Length:405 Identity:94/405 - (23%)
Similarity:150/405 - (37%) Gaps:105/405 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKAG 234
            |.|||.:.:|:|:|..||..|..|||||...:.:........|.:.:|.:..|:.|||:||.:.|
 Worm    11 CEICGQKTSGRHFGVLSCRSCAAFFRRSATWSRKKVQCVKGTCKIFEDGKFNCKQCRLKKCVEVG 75

  Fly   235 MKKEAVQNERDRIS--------CRRTSND------DPDPGN----GLSVISLV-KAENESRQSKA 280
            |..:..|..||.||        |......      :||..:    .:.|..|| .|:|...:...
 Worm    76 MDSKKFQTNRDLISSCSVPQSLCNFLGRPEFILCCEPDKASVFKTTIDVTYLVDMAKNLLEKDPC 140

  Fly   281 GAAMEPNINEDLS-----------NKQFASI-----NDVCESMKQQLLTLVEWAKQIPAFNELQL 329
            ...:. |..|.||           ||:...|     |:..::.:|..|..|||......|.||..
 Worm   141 QCPLS-NSLEQLSTTLENMRGMKLNKETQIIKKLGKNESLKTWEQGFLRAVEWFSNFSEFRELDE 204

  Fly   330 DDQVALLR---------------------AHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPD 373
            :.::.:|:                     |.....||:..:...||:.|..:..:.|  |.:..:
 Worm   205 NLKMEILKTCWVSWIRLDKLSETANKRVNATLDNSLLMVGNDSCMHMNDYEVDLSWC--TNYSLE 267

  Fly   374 PL----VSPNLDISRIGARIIDE-----LVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHRI 429
            .|    ::|:           ||     |:..|.|:....||.:.:         ...|:..|..
 Worm   268 QLAFFFLTPD-----------DEKNYRQLIQDMVDLNPSSTEISYM---------LLQLSLEHAG 312

  Fly   430 KSLRHQIL-----------NNLEDYISDR----QYESRGRFGEILLILPVLQSITWQMIEQIQFA 479
            |.|:..||           |.|.||.:.:    .|.|  |..:::.|...|::.....||:.:.|
 Worm   313 KRLQGDILEATESLVQAQANQLHDYYAKKLKLSNYSS--RLTQLMKITRTLEADMRLRIEKKKVA 375

  Fly   480 KIFGVAHIDSLLQEM 494
            .:|.:..|.....||
 Worm   376 DVFNIFKIQFSHPEM 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 26/74 (35%)
NR_LBD_HNF4_like 264..494 CDD:132729 59/291 (20%)
nhr-103NP_503607.1 ZnF_C4 10..77 CDD:197701 24/65 (37%)
Hormone_recep 164..371 CDD:278530 46/230 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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