DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-86

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_503561.2 Gene:nhr-86 / 178685 WormBaseID:WBGene00003676 Length:407 Species:Caenorhabditis elegans


Alignment Length:403 Identity:97/403 - (24%)
Similarity:153/403 - (37%) Gaps:87/403 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 NSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDK 216
            |:|.::.|.:.:::..:.|:||.:...|.|:||.:|..|..||||||..:..|.||...:|.:..
 Worm     6 NTSLEESQFRPEKKEKSTCSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCRGNNDCEITA 70

  Fly   217 DKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSKAG 281
            :.|..||.||..||.:.||....||..||.|..|....|..|....|..:........|.||...
 Worm    71 NIRCMCRSCRFAKCLEVGMNPAGVQQRRDTIGKREIKPDSTDLMQLLGSVGDGYPPTTSAQSALV 135

  Fly   282 AAMEPNINEDL-----------------------------SNKQFASIN--DVCESMKQQLLTLV 315
            ..:.|:.|:.:                             ..|...::|  :.|....:::..:.
 Worm   136 EDLHPSFNDRMPILMKMRVNYRKMDNARLVIHRKDGQSLFKEKTPKAVNYKEACAQSIREVSLVA 200

  Fly   316 EW-AKQIPAFNELQLDDQVALLR-------AHAGEHLLLGLSRRSMHLKD---VLLL-------S 362
            :| |.....|..|.:|.:..|.|       ...|..|        .|:.|   .|:|       :
 Worm   201 DWVAWCFDDFVTLPMDQKKVLFRNFYTPFSVLEGAFL--------CHINDTSNALILPSGDYIDT 257

  Fly   363 NNCVITRHCPDP--------------LVSPNLDISRIGARIIDELVTVMKDVGIDDTEFACIKAL 413
            ||.....:.||.              :..|:.:::|.|      ||..|....||..||..:...
 Worm   258 NNLKSFFNIPDEEQPMTDDEIEKFCRMFKPSFELNRRG------LVLPMMAEKIDVFEFFALCTF 316

  Fly   414 VFFDPNAKGLNEPHRI-----KSLRHQILNNLEDYI--SDRQYESRGRFGEILLILPVLQSITWQ 471
            ||:|   .||:|....     ||::.:::..|..|:  :.|..|...|...:|.:||.||....:
 Worm   317 VFWD---FGLDEQTDDCMMIGKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRR 378

  Fly   472 MIEQIQFAKIFGV 484
            ..|.|:...:|.|
 Worm   379 FQEDIEITNVFNV 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 30/74 (41%)
NR_LBD_HNF4_like 264..494 CDD:132729 57/291 (20%)
nhr-86NP_503561.2 ZnF_C4 23..91 CDD:197701 28/67 (42%)
NR_LBD 187..375 CDD:132726 46/204 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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