Protein Alignment Hnf4 and nhr-90

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_503263.1
• Gene: nhr-90 / 178577
• WormBaseID: WBGene00003680
• Length: 393
• Species: Caenorhabditis elegans
• Alignment Length: 391
• Identity: 90/391 - (23%)
• Similarity: 156/391 - (39%)
• Gaps: 67/391 - (17%)

  Fly   165 QSPTVCAICG-DRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 228
            :|...|.||| :...|.|:|...|..|..||||.....:......:.:|   .:....|:.|||:
 Worm     4 KSLQTCKICGAENTRGNHFGVQCCRACAVFFRRRAGTKYLRLKCLSVHC---GEAARFCKPCRLK 65

  Fly   229 KCFKAGMKKEAVQNERDRISCRRTSNDDPDP-------GNGLSVISLVKAENESR-----QSKAG 281
            :|::||||.|..|:.||.|   ::|:....|       |....||..|..::..:     .|..|
 Worm    66 RCYEAGMKIEYFQHNRDSI---KSSSIAQIPRSFANIVGRPSLVIFCVPQDSYQKTFVDLNSLVG 127

  Fly   282 AAME--------PNINEDLSN-KQFASINDVCESMKQQLLTLVE-------W-------AKQIPA 323
            .|.|        |.|.  |:. |:.|:.::..:...|.....:.       |       ||.:..
 Worm   128 KASEIFTAGPESPYIG--LTQLKKLATFSNCSKEWAQTRFKTISHGEMSYFWEFYFLRTAKWLTY 190

  Fly   324 FNELQ-LDDQVALLRAHAGEHLLLGLSR-------RSMHL--KDVLLLSNNCVI----TR-HCPD 373
            |:|.| :.|::.:....:..|:...|.:       |.:.|  :....:||..::    |: ...|
 Worm   191 FDEFQRIPDEIKIKLLLSFWHVFARLDKLITTAKARKLKLCSQQTWAMSNGLILDFDRTKVDFSD 255

  Fly   374 PLVSPNLD----ISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGL-NEPHRIKSLR 433
            ....|..|    ::.|.|..:...|..:.::.:.|.||..:.|.:.|....|.. .:..:|....
 Worm   256 ISNYPTEDLFYFLNSITALDLQPQVLELMELEVSDMEFNFMLAQLTFSYAGKRFQGDILKICDRF 320

  Fly   434 HQIL-NNLEDYISDRQYESR--GRFGEILLILPVLQSITWQMIEQIQFAKIFGVAHIDSLLQEML 495
            .::| |:|.:|........|  ||.|:|:.|...:|:..|:...:.:.|.||.|..::....||.
 Worm   321 QEVLSNDLHEYYVKEMRTPRYSGRLGKIMKINNAIQNDIWKNRPRGELAAIFNVFKVEFSHPEMF 385

  Fly   496 L 496
            :
 Worm   386 I 386

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	25/75 (33%)
		NR_LBD_HNF4_like	264..494	CDD:132729	56/280 (20%)
nhr-90	NP_503263.1	ZnF_C4	8..75	CDD:197701	23/69 (33%)
		Hormone_recep	158..365	CDD:278530	40/206 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910