DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-58

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_503236.1 Gene:nhr-58 / 178573 WormBaseID:WBGene00003648 Length:393 Species:Caenorhabditis elegans


Alignment Length:390 Identity:88/390 - (22%)
Similarity:140/390 - (35%) Gaps:95/390 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQ--------CRYCR 226
            |.||..::.|.|:|..||..|..||||.           |.:.:|:|...|:        |:.||
 Worm     8 CKICDRKSQGIHFGVPSCRACAAFFRRR-----------AGSDLVEKSCMNKKCGKEFFLCKPCR 61

  Fly   227 LRKCFKAGMKKEAVQNERDRISCRRTSNDDP----------------DP-----GNGLSVISLV- 269
            |.:|:..||.::..|.:||.::.....|..|                ||     ...:.|..|| 
 Worm    62 LVRCYAVGMDEKKFQFDRDALASTVLLNTIPKSFDKFVGRPQFVHFCDPSAPSTSKFIDVRLLVE 126

  Fly   270 KAENESRQSKAGAAMEPNINE------------------DLSNKQFASINDVCESMKQQLLTLVE 316
            |.||   ..|:|.:..|::|:                  :::.....|..|..:..:...||...
 Worm   127 KGEN---ILKSGPSWTPHMNKGPLFKLANFHNVFTKMPVNMATNNVFSRGDCSDCWEYYFLTTAT 188

  Fly   317 WAKQIPAFNELQLDDQVALLRA--HAGEHL----LLGLSRRSMHL--KDVLLLSNNCVITRHCPD 373
            |......|.:|:...::.:|.|  |....:    ...|:||...|  |..:..||...:.   .|
 Worm   189 WLTNFDEFQKLEHPVKMKILFAIWHMWGRMDKLACTALARRRQQLSAKSEIAQSNGLFLD---VD 250

  Fly   374 PLVSPNLDISRI-------------GARIIDELVTVMKDVGIDDTEFA---CIKALVFFDPNAKG 422
            .|.   ||:|.|             |.|..|.:..|...|.:|.|...   .:..:.|:....:.
 Worm   251 TLA---LDVSWISEFKLEEVEFFIDGFRNWDLMELVQVFVELDPTPIELNYMLAQMSFYYAGNRF 312

  Fly   423 LNEPHRIKSLRHQIL-NNLEDYISDRQYESR--GRFGEILLILPVLQSITWQMIEQIQFAKIFGV 484
            ..|...|.....||| ::|..|..:.::.|.  ||...:|.|...:||...:...:...||...:
 Worm   313 QGEILEIMDRFQQILSDDLHKYYVNERHTSNYSGRLSRLLKINNAVQSSVRKRRPKTDIAKTLNI 377

  Fly   485  484
             Worm   378  377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 25/82 (30%)
NR_LBD_HNF4_like 264..494 CDD:132729 57/267 (21%)
nhr-58NP_503236.1 ZnF_C4 8..73 CDD:197701 24/75 (32%)
Hormone_recep 174..368 CDD:278530 44/199 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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