DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-11

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001041063.1 Gene:nhr-11 / 177724 WormBaseID:WBGene00003610 Length:459 Species:Caenorhabditis elegans


Alignment Length:461 Identity:97/461 - (21%)
Similarity:159/461 - (34%) Gaps:143/461 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 VCAIC-GDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVD---KDKRNQCRYCRLRK 229
            :||:| ...|...|:|...|..|..||||::..:.:|.|.....|.:.   ...|..||.|||||
 Worm     4 LCAVCESPTAFTLHFGGRCCKACAAFFRRTIALDLKYECAADDPCEIHFKFPGMRLVCRECRLRK 68

  Fly   230 CFKAGMKKEAVQNERDRISCRR----TSNDDPDPGNG--------------------------LS 264
            |:.|||:.|.|:::|:..:|.|    .:|.|..|.:.                          :.
 Worm    69 CYSAGMRSELVRSKRENFACTRRKDSRNNSDAAPNSNSPSTRQSSSPEEMDDWSFQMFEEKPKIE 133

  Fly   265 VISLVKA------------ENESRQS-----------KAGAAMEPN------------------- 287
            .:.|..:            |..||.|           .:.||..|:                   
 Worm   134 DLPLTPSISHPPLPTQLMPEESSRTSSFDGGYCSSYPSSSAATHPSPPGMLYSIENNSILQYYHS 198

  Fly   288 --------------------INEDLSNKQFA-SINDVCE--------SMKQQLLTLVEWAKQIPA 323
                                |.:..:|.|.. ::||:..        .::...:.|.::|.:.|.
 Worm   199 METGLCSKRRIMYTNTGMDFILDTHANLQCPFTVNDLRPHDYRNFRGMLRHDFVMLFDYATRFPE 263

  Fly   324 FNELQLDDQ---------VALLRAHAGEHLLLGLSRRSMHL-------KDVLLLSNNCVITRH-- 370
            ||.....::         |..:.:.|.....||.:.|.|.|       .|.|.:|.|.:..|.  
 Worm   264 FNSFTSHEKNMFYRQIVAVDFILSSAYYTAKLGQAHRQMVLTNGEYLNMDPLPMSGNEIDARRYF 328

  Fly   371 -CPDPLVSPNLDISRIGA------RIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHR 428
             |.:       |.|:..|      .|.:|.:.....:.:...||..:|||..:......|.|..|
 Worm   329 DCDE-------DFSKYRALMPMHIAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGR 386

  Fly   429 IKSLRHQILNNLEDYISDRQYESRG----RFGEILLILPVLQSITWQMIEQIQFAKIFGVAHIDS 489
            .|..|.:  |.:..::|...:...|    |.||:|:.:..|:....::........:|.|.:.||
 Worm   387 EKCRRQR--NIIIGFLSKMCHSPGGGGEHRVGELLMSMNYLRESAQKLTTSYVMLTVFNVLNCDS 449

  Fly   490 LLQEML 495
            :|.|||
 Worm   450 MLHEML 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 29/78 (37%)
NR_LBD_HNF4_like 264..494 CDD:132729 59/329 (18%)
nhr-11NP_001041063.1 ZnF_C4 4..77 CDD:197701 27/72 (38%)
HOLI 247..426 CDD:214658 40/187 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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