DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hnf4 and nhr-105

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001021303.1 Gene:nhr-105 / 177476 WormBaseID:WBGene00003695 Length:429 Species:Caenorhabditis elegans


Alignment Length:418 Identity:101/418 - (24%)
Similarity:179/418 - (42%) Gaps:84/418 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 QQLQQQQQQQSPTV---------CAICGDRA-TGKHYGASSCDGCKGFFRRSVRKNHQYTCRFAR 210
            |..::::...|.|:         |.:||..| ||.|||.::|.|||.||||.|.:.:...|::..
 Worm    15 QHHEEEEAGPSTTIKAEEEDGPCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCKYKN 79

  Fly   211 NCVVDK--DKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCR-RTSNDDPDPGNG-------LSV 265
            :|.::|  :.:..||.||.:||.:.||.::|:...||.|..| |.::.|..|.:.       ||:
 Worm    80 HCRLEKSVNAKRLCRSCRYQKCLEVGMTEDALHPCRDVIGRRVRNNSSDSSPISSPPSIPTPLSI 144

  Fly   266 ISLVK--------------AENESRQSKAGAAMEP-NINEDL----SNKQFASI---NDVCESMK 308
            ..|:.              .:.:.|...|....|| |.||.:    ....:.::   :.:..|:|
 Worm   145 CKLMNLSEGDHKLLQTITDMDTDIRTRTAHILGEPANGNEQIHFYSPTPDYTNVIVNHGIGPSLK 209

  Fly   309 QQLLTLVEWAKQIPAFNELQLDDQVAL-----LRAHAGEHLLLGLSRRSM-HLKDVLLLSN-NCV 366
            ..:|.|.||..:||.|.||....|..|     ||....||   ||....| :.|:|..||: .|:
 Worm   210 VDILLLREWVDRIPGFRELSERFQQHLMHRFCLRYTVIEH---GLFTAQMPYHKNVWFLSDRTCL 271

  Fly   367 IT----------RHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDP--- 418
            ::          :|....:::....::.....:|.|:...::.:..|..|.|.:|.|:...|   
 Worm   272 VSEFENLPQEIKKHLTPKVINEQQLLASFTEMLIHEVADPLRRLKPDSVEVATVKTLMLLKPTCL 336

  Fly   419 ---NAKGLNEPHRIKS---LRHQILNNLEDYISDRQYESRG--------RFGEILLILPVLQSIT 469
               :...|:....|||   :|::::|.|..:     |...|        |..|||.:...::...
 Worm   337 REIDGDYLSTETDIKSVNDVRNRVINGLYSH-----YIKNGMDPEQLPIRVSEILNLTGGVEQCA 396

  Fly   470 WQMIEQIQFAKIFGVAHIDSLLQEMLLG 497
            .:.:|::...::|.::..|.....::.|
 Worm   397 ARALEEMHPTRVFNLSSFDPYSSNVIFG 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 30/77 (39%)
NR_LBD_HNF4_like 264..494 CDD:132729 59/285 (21%)
nhr-105NP_001021303.1 ZnF_C4 38..109 CDD:197701 29/70 (41%)
NR_LBD 202..395 CDD:132726 47/200 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.