Protein Alignment Hnf4 and nhr-92

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_500111.3
• Gene: nhr-92 / 176971
• WormBaseID: WBGene00003682
• Length: 354
• Species: Caenorhabditis elegans
• Alignment Length: 360
• Identity: 90/360 - (25%)
• Similarity: 147/360 - (40%)
• Gaps: 44/360 - (12%)

  Fly   167 PTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCF 231
            |..|.:||..:...|:|...|..|..||||:|.:.|:|.|:...||::....||.|:.||..||.
 Worm     2 PQHCQVCGVPSARIHFGGVVCSACSAFFRRTVVRGHEYRCKQMENCLIVSTIRNMCKKCRYTKCI 66

  Fly   232 KAGMKKEAVQNERDRISCR----RTSNDDPDPGNGLSVISLVKAENESRQSKAGAAMEPNINEDL 292
            ..|||:|:||..||....|    :.|.....|.....|.:....||..|.          |:.|.
 Worm    67 LVGMKRESVQKFRDVYGKREITVKNSTKTASPILKDFVKNYEHLENVRRV----------IHRDN 121

  Fly   293 SNKQFA-------SINDVCESMKQQLLTLVEWA-KQIPAFNELQLDDQVALLRAHAGEHLLL--G 347
            |...||       :..:..:.:.::...:.:|. .....|:||..|.:..||.....:.::|  |
 Worm   122 SRSVFAKEAPRPVNYKEATKVLLKEFKLVKDWINNSFREFSELPDDQKTTLLHNFYLQFIILEGG 186

  Fly   348 LSRRSMHLKDVLLLSN----NCVITR---HCPD---PLVSPNLDISRIGARIID----ELVTVMK 398
            .........|:..|.:    :||...   |.||   |:  ..::.|::.|...|    .:...|.
 Worm   187 YFACQYGRTDITYLPSGDYIDCVNPETYYHDPDGQQPI--SEVEASKMFASSFDTYRRNVYDPMI 249

  Fly   399 DVGIDDTEFACIKALVFFDPNAKGLNE--PHRIKSLRHQILNNLEDY--ISDRQYESRGRFGEIL 459
            .:..|..||..:.||..||...:|.::  ....:.:|..:...:..|  ::..:.:|..|.|:||
 Worm   250 RIACDKFEFLALTALTLFDTGLEGQSDQCTESCRRIRESVQREVLQYSKLTRSELDSSIRLGDIL 314

  Fly   460 LILPVLQSITWQMIEQIQFAKIFGVAHIDSLLQEM 494
            .|||.||..|.:..|.:..:.:.....:|.:...|
 Worm   315 SILPNLQRATQRFHEDMTISNVMNAYSVDEIFYNM 349

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	30/74 (41%)
		NR_LBD_HNF4_like	264..494	CDD:132729	53/257 (21%)
nhr-92	NP_500111.3	ZnF_C4	5..73	CDD:197701	27/67 (40%)
		Hormone_recep	129..330	CDD:278530	42/202 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910