DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-6

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_497731.1 Gene:nhr-6 / 175462 WormBaseID:WBGene00003605 Length:619 Species:Caenorhabditis elegans


Alignment Length:471 Identity:120/471 - (25%)
Similarity:200/471 - (42%) Gaps:109/471 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 EEAEAGRRRRRRDSSASRTASSDESESHIMHADA-LASAYPAASQPHSPIGLA-LSPNGGGLGLS 100
            ||.|      ::.||:|....| |..:.|.|..: |.....|...||:.:.|| .:|:.....||
 Worm   120 EEFE------QKPSSSSHRLPS-EMNASITHIKSELDPTMQAFQMPHNDLFLATAAPHYNPFALS 177

  Fly   101 N-----------SSNQSSENFALCNGNGNAGSAGGGSASSGSNNNNSMFSPNNNLSGSGSGTNSS 154
            |           :|....::|.:  .:...||.|   .:|.|||.....||::      |...:|
 Worm   178 NDFMPNPLMPSFTSPFYPQHFPV--SDSRRGSQG---TTSSSNNTGGTPSPHS------SSLPTS 231

  Fly   155 QQQLQ-------QQQQQQSPT--------------VCAICGDRATGKHYGASSCDGCKGFFRRSV 198
            ..|||       ......:||              :||:|.|||...||||.:|:||||||:|:|
 Worm   232 PPQLQGFLRSFLNPDNLSTPTSFGVPSETALDADKMCAVCNDRAVCLHYGARTCEGCKGFFKRTV 296

  Fly   199 RKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQN-----ERDRISCR---RTSND 255
            :||.:|||...:.|.:||..|::|:|||.:||.:.||.||.|::     .|.|:|.:   ..|.|
 Worm   297 QKNSKYTCAGNKTCPIDKRYRSRCQYCRYQKCLEVGMVKEIVRHGSLSGRRGRLSSKTKLARSED 361

  Fly   256 DPDPGNGLSVISLVKAENESRQSKAGAAMEPNINEDLSNKQFAS----------INDVCESMKQQ 310
            .|.|  .|.:::|:           |.|:|.:.|..:. :||..          ::....:.|:.
 Worm   362 QPSP--PLPLLALM-----------GKAIEDHTNMTVV-RQFMQPFDETIALRILHGELHATKKL 412

  Fly   311 LLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRH----C 371
            |:.:       |..:|:|..|...||.......:.:.::.|..:..|.::..:..:.:.:    |
 Worm   413 LMAM-------PQISEIQPADFQILLSRSFFAIMAIRVANRCGNSTDTIMFESGELFSLNAFPAC 470

  Fly   372 PDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFF----DPNAKGLNEPHRIKSL 432
            ...::...:|.:|..:.::|          .:...||...||.|.    :.|..||.....:..:
 Worm   471 FQQIIRFMVDKARTFSSLVD----------WEPQAFAAFIALQFLAGNTEHNVLGLTNKPLVDQV 525

  Fly   433 RHQILNNLEDYISDRQ 448
            :..|:|.|:|:.|..|
 Worm   526 QSTIINALKDHCSGSQ 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 39/79 (49%)
NR_LBD_HNF4_like 264..494 CDD:132729 35/203 (17%)
nhr-6NP_497731.1 Pax2_C 165..261 CDD:289189 23/106 (22%)
NR_DBD_NGFI-B 266..340 CDD:143527 39/73 (53%)
HOLI 405..560 CDD:214658 28/154 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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