DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-19

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_496066.2 Gene:nhr-19 / 174512 WormBaseID:WBGene00003618 Length:477 Species:Caenorhabditis elegans


Alignment Length:423 Identity:112/423 - (26%)
Similarity:178/423 - (42%) Gaps:106/423 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 QSPTV---------CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRN 220
            |.|:|         |.|||:.:||||||..:|.|||.||||:|.:.....|:..:.|.|....|.
 Worm    66 QMPSVKPEKGVIGQCLICGEPSTGKHYGIVACLGCKTFFRRAVVQRQDTECKREKPCDVTTMARK 130

  Fly   221 QCRYCRLRKCFKAGMKKEAVQNERDRISCRR--------TSNDDP------DPGNGLSVI-SLVK 270
            .||.||.|||.::||.|||:|..||.|.|||        ||...|      |....|::: :|..
 Worm   131 ACRACRYRKCLESGMSKEALQPRRDLIGCRRIRSRPSCSTSTPTPPRPQVEDKSQYLTLLENLTT 195

  Fly   271 AENESRQSKAGAAMEPNINEDLS--------------------------------NKQFASI-ND 302
            .::..|:.|...........||:                                :|....: .|
 Worm   196 IDDRLRKKKLEVVASRQAAVDLAVLAKQGCMSITDTSGPSTSRYVPGGTSPNGGDHKMMVMLGTD 260

  Fly   303 VCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL--GLSRRSMHLKDVLLLSNNC 365
            :..|.:.:||.::||.:.:|.|..|.:.|:..:|:..|...|:|  |......::.||.|::|..
 Worm   261 ISVSTQSELLMMLEWTRTLPVFASLPVQDRSVILKRFAVHCLILEHGYYTAQANIDDVWLITNGT 325

  Fly   366 VITRHCPDPLVSPNLDISRIGARI---------------------IDELVTVMKDVGIDDTEFAC 409
            .:.|         |::....|.:|                     |||:.|.::::.:...|...
 Worm   326 CMPR---------NVEKLEEGCKISVSADRRWRQEKLYKQMTDCCIDEVATPLRNLKLSPQEIVV 381

  Fly   410 IKALVFFDPNAKG----LNEPHR--IKSLRHQILNNLEDYISDRQYESRG------RFGEILLIL 462
            ||.:|.|:.....    :.|..|  :.:.|:::::.|..|     |||.|      |||.::|:|
 Worm   382 IKIIVLFNCGCSSDYSEITEASRRIVLTFRNKVVSALFAY-----YESVGLQNYAERFGNLVLML 441

  Fly   463 PVLQSITWQMIEQIQFAKIFGVAHIDSLLQEML 495
            ..:.|....|:|..|..::|.:...|.|.||:|
 Worm   442 SGVSSAASSMLEAYQVMRLFKITPFDPLSQELL 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 36/74 (49%)
NR_LBD_HNF4_like 264..494 CDD:132729 60/298 (20%)
nhr-19NP_496066.2 NR_DBD_HNF4A 80..155 CDD:143518 36/74 (49%)
HOLI 268..447 CDD:214658 44/192 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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