DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hnf4 and nhr-16

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_494785.1 Gene:nhr-16 / 173781 WormBaseID:WBGene00003615 Length:388 Species:Caenorhabditis elegans


Alignment Length:387 Identity:95/387 - (24%)
Similarity:156/387 - (40%) Gaps:103/387 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKAG 234
            ||||.:.|.|.|:||.:|..|..||||:|.....|:|:...:|.|..:.|..||.||..||.:.|
 Worm    14 CAICQESAEGFHFGAEACRACAAFFRRTVSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVG 78

  Fly   235 MKKEAVQNERDRISCRRT-----------SNDD----PDP------------GNGLSVISLVKAE 272
            |....||   .|:...:|           ||..    |.|            .|.:.::..::..
 Worm    79 MNPAGVQ---QRLPPSKTLVEVSMDLPTVSNPSILSFPSPPSSLMLHIPSSYSNQMPILDKMRKS 140

  Fly   273 NE----SRQS---KAGAAMEPNINEDLSNKQFASINDVCESMKQQLLT--LVEWAKQIPAFNELQ 328
            .|    :|::   |.||    ||.:|...|.......:.:.||...||  .|.|.  ...|..|.
 Worm   141 YETLCNARKTLHRKDGA----NIFQDNVPKPVTYKKAIDQGMKDVKLTSDWVSWC--FEDFKNLS 199

  Fly   329 LDDQVALL-RAHAGEHLLLG--LSRRSMHLKDVLLLSNNCVITRHCPDPLVSPN------LDIS- 383
            :|.:..|. .|:....::.|  ||    |:             |:.|:.||.|:      ||:: 
 Worm   200 IDQKKILFHNAYTPYFMMEGGFLS----HI-------------RNTPEHLVMPSGDYIDTLDLNS 247

  Fly   384 ---------RIGARIIDEL-----------VTV-MKDVGIDDTEFACIKALVFFDPNAKGLNEP- 426
                     :|.::.||.|           ||: |..:.:|..||..:..|:.:|.....::|. 
 Worm   248 FYNCSESDRQISSKEIDRLFKPSNDRFIKSVTLPMMSLQLDIFEFFVLFTLLLWDTGLIEISEEC 312

  Fly   427 ----HRIKSLRHQILNNLEDYISD--RQYESRGRFGEILLILPVLQSITWQMIEQIQFAKIF 482
                .::|:   |:|..|:.|:.:  :..|...|...|:.:||.:|....::.:.::..|:|
 Worm   313 IEIGTKVKT---QVLKELDFYMRNVKKVEEPLVRTANIVNLLPAVQKGVRRIQDDLEVTKVF 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 31/74 (42%)
NR_LBD_HNF4_like 264..494 CDD:132729 57/266 (21%)
nhr-16NP_494785.1 ZnF_C4 13..81 CDD:197701 29/66 (44%)
NR_LBD 177..356 CDD:299703 45/200 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.