Protein Alignment Hnf4 and nhr-113

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_492931.1
• Gene: nhr-113 / 173033
• WormBaseID: WBGene00003703
• Length: 341
• Species: Caenorhabditis elegans
• Alignment Length: 295
• Identity: 73/295 - (24%)
• Similarity: 120/295 - (40%)
• Gaps: 80/295 - (27%)

  Fly   170 CAICGDRAT-GKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKA 233
            |.||.|..| |.|:|.|.|..|..||||:|:  :|:||....:||:..:|:..||.||...|.||
 Worm     8 CRICNDSLTSGFHFGTSCCIACAAFFRRTVK--NQFTCNANNDCVISFEKKFTCRACRYNNCLKA 70

  Fly   234 GMKKEAVQN-ERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSKAGAAMEPNINEDLSNKQF 297
            ||:|:.::. ..:.:..::..|.|.....|.|..|       |..|::...:.|.|     .|..
 Worm    71 GMRKDYIRKINSNYVPKQKCVNVDASRSIGTSSAS-------SSSSESSPLVSPII-----EKPI 123

  Fly   298 ASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLS 362
            ...:.:.:...|:||          .|...:::..:|..|.::.:::|        |.|.   ::
 Worm   124 GKYSKILKRYPQELL----------QFYVKEVEKTIANRRKNSSKNIL--------HAKS---MN 167

  Fly   363 NNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPH 427
            ...|||.|                     :..:.|:         |||        |..|:::.|
 Worm   168 ELMVITAH---------------------QSGSAME---------ACI--------NCPGVSKLH 194

  Fly   428 RIKSLR--HQILNNLEDYI-SDRQYE-SRGRFGEI 458
            : |.:|  |:....|..:: |.|:|. |.|...||
 Worm   195 Q-KDIRVLHKYFQFLNVWLDSVREYSMSDGAHYEI 228

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	32/76 (42%)
		NR_LBD_HNF4_like	264..494	CDD:132729	38/199 (19%)
nhr-113	NP_492931.1	ZnF_C4	7..75	CDD:197701	31/68 (46%)
		HOLI	173..326	CDD:214658	20/95 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000