DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hnf4 and nhr-49

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001367039.1 Gene:nhr-49 / 172839 WormBaseID:WBGene00003639 Length:501 Species:Caenorhabditis elegans


Alignment Length:536 Identity:159/536 - (29%)
Similarity:249/536 - (46%) Gaps:122/536 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 SSQQQLQQQQQQQSPTV----------CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR 207
            |...||.|..::.|...          ||:|||::||.|||..||:||||||||:|.::.::|||
 Worm     8 SKHIQLNQIDEESSDDFMDLVDPLAEPCAVCGDKSTGTHYGVISCNGCKGFFRRTVLRDQKFTCR 72

  Fly   208 FARNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTS--------NDDPDPG---- 260
            |.:.||:||:.|..|||||.:||.:.|||:||:|.|||.:....:.        ..|..||    
 Worm    73 FNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGASLNGTPFKKDRSPGYENG 137

  Fly   261 -------NGLSVISLVKAENESRQSKAGAAMEPNINEDLSNK----------------------- 295
                   ||:...::......|....|...||..:|:::.|:                       
 Worm   138 NSNGVGSNGMGQENMRTVPQSSSVIDALMEMEARVNQEMCNRYRRSQIFANGSGGSNGNDTDIQQ 202

  Fly   296 -------QFASINDVC-------ESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 346
                   .||..|..|       |..:..||.:|||||.|..|.:|.::|::.||:.:|.:||:|
 Worm   203 GSDSGASAFAPPNRPCTTEVDLNEISRTTLLLMVEWAKTINPFMDLSMEDKIILLKNYAPQHLIL 267

  Fly   347 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDI--------SRIGARIIDELVTVMKDVGID 403
            ..:.||.....|.|. ||..:||       ..|.|:        |.|..|::||:|..|:.:.:.
 Worm   268 MPAFRSPDTTRVCLF-NNTYMTR-------DNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMR 324

  Fly   404 DTEFACIKALVFFDPNAKGLNEPHR--IKSLRHQILNNLEDYISDRQ-YESRGRFGEILLILPVL 465
            :.||.|:|||.|..|.||||:...:  |:..|:::|..|..:|.|:. .::..|:|.|||:.|.|
 Worm   325 EQEFVCLKALAFLHPEAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPAL 389

  Fly   466 QSITWQMIEQIQFAKIFGVAHIDSLLQEMLLGGELADNPLPLSPPNQSNDYQSPTHTGNMEGGNQ 530
            :::|..:||.:...|.||:|.:||||.|.:| .::.|:  ..:|.:......|||          
 Worm   390 KALTQLLIENMTLTKFFGLAEVDSLLSEFIL-DDINDH--STAPVSLQQHLSSPT---------- 441

  Fly   531 VNSSLDSLATSGGPGSHSLDLEVQHIQALIEANSADDSFRAYAASTAAAAAAAVSSSSSAPASVA 595
                  :|.|:|             :..|..|.|..    :.::.:.......:|::.:||.::.
 Worm   442 ------TLPTNG-------------VSPLNPAGSVG----SVSSVSGITPTGMLSATLAAPLAIH 483

  Fly   596 P-ASISPPLNSPKSQH 610
            | .|....|||.::.|
 Worm   484 PLQSQDSILNSEQNNH 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 44/74 (59%)
NR_LBD_HNF4_like 264..494 CDD:132729 81/277 (29%)
nhr-49NP_001367039.1 NR_DBD_HNF4A 35..110 CDD:143518 44/74 (59%)
HOLI 228..382 CDD:214658 54/161 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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