DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-93

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001309665.1 Gene:nhr-93 / 13212318 WormBaseID:WBGene00003683 Length:414 Species:Caenorhabditis elegans


Alignment Length:350 Identity:89/350 - (25%)
Similarity:132/350 - (37%) Gaps:73/350 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 PTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQ----CRYCRL 227
            |:.|.:|...|.|.|...::|.|||.||||......:..|. .||...|..||.:    ||.||.
 Worm    59 PSKCMVCARPAHGYHCDVTTCKGCKSFFRRMYLLRSEIKCS-GRNDCFDLKKRIEPLLRCRSCRY 122

  Fly   228 RKCFKAGMKKEA--------------VQNERD----RISCRRTSNDDPDPGNGLSVISLVKAENE 274
            |||...||..||              |.|..|    ::...|....:||......:..|:|...:
 Worm   123 RKCLLVGMNPEALVFNMLTKEDSIIKVINSLDYLDQKVEKFRLCAYNPDWATMGGLADLIKNNGK 187

  Fly   275 SRQSK-----AGAAMEP-------NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNEL 327
            ..|..     .|..::|       |...||  |.|::  |..|.....||..:|::|....|..|
 Worm   188 LNQVDKYGPFPGWPLDPDHEFAHQNFYRDL--KAFST--DRKEWRLFNLLASIEYSKTFLFFQNL 248

  Fly   328 QLDDQVALLRAHAGEHLLLGLSRRS-------MHLKDVLLLSNNCVITRHCPDPLVSPNLDISRI 385
            .|.||:.:|:     |...|.|..|       ...:|:           ..||....|    |::
 Worm   249 DLPDQLRVLK-----HTAAGCSSLSCSFFTLRQKYEDI-----------RQPDGTQRP----SKL 293

  Fly   386 --GARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGL--NEPHRIKSLRHQILNNLEDYISD 446
              |..:...|:..|:.||....|:..:|||...:|...||  ...|.::..|....|.|.::...
 Worm   294 APGYALFSALIGPMRRVGTQYFEYLLLKALYLCNPAIPGLTVQAQHVLERERRLYSNILMEFCLR 358

  Fly   447 RQYESRGRFGEILLILPVLQSITWQ 471
            .......:|.:::.::.||:   ||
 Worm   359 NYSNGATKFVDVIQLIGVLE---WQ 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 32/92 (35%)
NR_LBD_HNF4_like 264..494 CDD:132729 51/230 (22%)
nhr-93NP_001309665.1 ZnF_C4 61..133 CDD:197701 28/72 (39%)
HOLI 230..378 CDD:214658 37/167 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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