DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hnf4 and hnf4a

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_002933229.2 Gene:hnf4a / 100492541 XenbaseID:XB-GENE-482419 Length:466 Species:Xenopus tropicalis


Alignment Length:476 Identity:248/476 - (52%)
Similarity:317/476 - (66%) Gaps:64/476 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 NLSGSGSGTNSSQQQLQQQQQQQS---PTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQY 204
            |:.....||::|...:.......|   .::|||||||||||||||||||||||||||||||||.|
 Frog    32 NMQVLSIGTDTSPSDVTSLNATNSIGVNSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMY 96

  Fly   205 TCRFARNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPD-PGNGLSVISL 268
            :|||:|.||||||||||||||||:|||:||||||||||||||||.||:|.:|.. |    |:..|
 Frog    97 SCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP----SINVL 157

  Fly   269 VKAENESRQSKAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQV 333
            ::||..|:|..:...:   :|.|:..|:.|||.|||:|||||||.||||||.||||.||.|||||
 Frog   158 IQAEVLSQQITSSVGV---LNTDIRGKKIASITDVCDSMKQQLLVLVEWAKYIPAFCELPLDDQV 219

  Fly   334 ALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMK 398
            ||||||||||||||.::|||..||:|||.|:.||.|:||:      |::.|:..||:||||...:
 Frog   220 ALLRAHAGEHLLLGATKRSMMYKDILLLGNDRVIPRNCPE------LEVGRVAVRILDELVLPFQ 278

  Fly   399 DVGIDDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILP 463
            ::.|||.|:||:||::||||:||||::|.:||.:|:|:..:|||||:||||:|||||||:||:||
 Frog   279 ELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLP 343

  Fly   464 VLQSITWQMIEQIQFAKIFGVAHIDSLLQEMLLGGELADNP---LPLSP--------PN---QSN 514
            .||||||||||||||.|:||:|.||:|||||||||...:.|   .||.|        .|   .:|
 Frog   344 TLQSITWQMIEQIQFVKLFGMAKIDNLLQEMLLGGSANEAPHTHHPLHPHLVQDHLATNVIVANN 408

  Fly   515 DYQSPTHTGNMEGGNQVNSSLDSLATSGGPGSHSLDLEVQHIQALIEANSADDSFRAYAASTAAA 579
            ...|..|.|.|       |:.::...|...||.:...::.|                        
 Frog   409 TLPSQLHNGQM-------STPETPQPSPPAGSGAEQYKIVH------------------------ 442

  Fly   580 AAAAVSSSSSAPASVAPASIS 600
              .|::|.:..|.|:..::|:
 Frog   443 --GAIASVNKQPTSIPQSTIT 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 68/74 (92%)
NR_LBD_HNF4_like 264..494 CDD:132729 139/229 (61%)
hnf4aXP_002933229.2 NR_DBD_HNF4A 62..137 CDD:143518 68/74 (92%)
NR_LBD_HNF4_like 153..374 CDD:132729 139/229 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 256 1.000 Domainoid score I1997
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 454 1.000 Inparanoid score I1550
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003424
OrthoInspector 1 1.000 - - otm49535
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1958
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.050

Return to query results.
Submit another query.