Protein Alignment ct and lhx5

DIOPT Version :9

• Sequence 1: NP_524764.1
• Gene: ct / 44540
• FlyBaseID: FBgn0004198
• Length: 2175
• Species: Drosophila melanogaster
• Sequence 2: NP_001016082.1
• Gene: lhx5 / 548836
• XenbaseID: XB-GENE-490400
• Length: 402
• Species: Xenopus tropicalis
• Alignment Length: 326
• Identity: 72/326 - (22%)
• Similarity: 107/326 - (32%)
• Gaps: 114/326 - (34%)

  Fly  1640 FGEAVLGLSQG-SVSELLSKP--KPWHM----LSIKGREPFIRMQLWLSDANNVERLQLLKNERR 1697
            ||....|.|.| |.|:|:.|.  |.:|:    ..:..::.....:|::.|.|..    :.|.:..
 Frog    60 FGTKCAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKF----VCKEDYA 120

  Fly  1698 EASKRR------------RSTGPNQ----QDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSK 1746
            .||..:            ||..|:.    ||.|.:|..:.::|..|::.......||.....|
 Frog   121 SASSLKESSLNSVSSCTDRSLSPDLQDPIQDESKETDHSTSSDKETANNENEEQNSGTKRRGP-- 183

  Fly  1747 KQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHR---MRLKQQ----- 1803
              |.....:|.|.|:.|||..|.|.....|.||.|.||..|.|..||.|.|   .|:||.
 Frog   184 --RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGA 246

  Fly  1804 ------------------------------------------------VPHGPAGQDNPIPSRES 1820
                                                            .||||.......|:..|
 Frog   247 RRHAFFRSPRRMRPLGGRLDESDILSSGPYSYYGDYQGDYYGSGNYDFFPHGPPSSQTQSPADSS 311

  Fly  1821 ------TSATPFDPVQFRI-----LLQQRLLEL--HKE----RMGMSGA--PI--------PYPP 1858
                  ..:||..|::.::     ...||..::  |.:    ...|:|:  ||        |.||
 Frog   312 YLQNSGPGSTPLGPLESQLSGHHPSENQRYADMISHPDTPSPEPSMTGSLHPISGEVFSGGPSPP 376

  Fly  1859 Y 1859
            :
 Frog   377 F 377

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ct	NP_524764.1	CUT	886..955	CDD:280527
		CUT	1335..1411	CDD:280527
		CUT	1616..1690	CDD:280527	14/56 (25%)
		Homeobox	1749..1801	CDD:278475	22/54 (41%)
lhx5	NP_001016082.1	LIM1_Lhx1_Lhx5	5..56	CDD:188753
		LIM2_Lhx1_Lhx5	64..119	CDD:188761	13/58 (22%)
		Homeobox	183..237	CDD:365835	22/57 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910