Protein Alignment ct and Pbx2

DIOPT Version :9

• Sequence 1: NP_524764.1
• Gene: ct / 44540
• FlyBaseID: FBgn0004198
• Length: 2175
• Species: Drosophila melanogaster
• Sequence 2: NP_001002828.1
• Gene: Pbx2 / 406164
• RGDID: 1303084
• Length: 430
• Species: Rattus norvegicus
• Alignment Length: 496
• Identity: 94/496 - (18%)
• Similarity: 149/496 - (30%)
• Gaps: 207/496 - (41%)

  Fly  1550 PPQHAISLPPSAG-------GAQPGGPGGNQGSSNPSNSE--------KKPM------LMPV--- 1590
            ||      ||..|       |.:|||||...|..:|....        |:.:      :|.:
  Rat     8 PP------PPGGGRGGLGLVGGEPGGPGEPPGGGDPGGGSGGVPGGRGKQDIGDILQQIMTITDQ 66

  Fly  1591 ---------HGTNAMRSLHQHMSPTVYEMAALTQDLDTHDITT------------KIKEALLANN 1634
                     |..|..|     |.|.::.:....::.....|.:            ::...|||..
  Rat    67 SLDEAQAKKHALNCHR-----MKPALFSVLCEIKEKTGLSIRSSQEEEPVDPQLMRLDNMLLAEG 126

  Fly  1635 I------GQKIFGEAVLGLSQGSVS---------------------------------------- 1653
            :      |......|....|.|.||
  Rat   127 VAGPEKGGGSAAAAAAAAASGGGVSPDNSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVM 191

  Fly  1654 ELL---SKPKP------WHMLSIKGRE-PFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGP 1708
            .||   |:.:|      ..|:||..|: ..|:|||   ..:..|.:.:|::...:|.::||
  Rat   192 NLLREQSRTRPVAPKEMERMVSIIHRKFSAIQMQL---KQSTCEAVMILRSRFLDARRKRR---- 249

  Fly  1709 NQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVG 1773
                |.|..::...|:::.|                                   ...:|||:..
  Rat   250 ----NFSKQATEVLNEYFYS-----------------------------------HLSNPYPSEE 275

  Fly  1774 TIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPAGQDNPIPSRESTSATPFDPVQFRILLQQR 1838
            ..|.||.:.|:....::|||.|.|:|.|:.:  |...::..|.:           |:..:.:.|.
  Rat   276 AKEELAKKCGITVSQVSNWFGNKRIRYKKNI--GKFQEEANIYA-----------VKTAVSVAQG 327

  Fly  1839 LLELHKERMGMSGAPIPYPPYFAAAAILGRSLAGIPGAAAAAGAAAAAAAVGASGGDELQALNQA 1903
                     |.|....|.||          |.||..|:...:|:......:....||...|
  Rat   328 ---------GHSRTSSPTPP----------SSAGSGGSFNLSGSGDMFLGMPGLNGDSYPA---- 369

  Fly  1904 FKEQMSGLDLSM-PTLKRERSDDYQDDLELEGGGHNLSDNE 1943
              .|:..|..|| |.       .|.|::   |||...|..|
  Rat   370 --SQVESLRHSMGPA-------SYGDNI---GGGQIYSPRE 398

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ct	NP_524764.1	CUT	886..955	CDD:280527
		CUT	1335..1411	CDD:280527
		CUT	1616..1690	CDD:280527	23/141 (16%)
		Homeobox	1749..1801	CDD:278475	13/51 (25%)
Pbx2	NP_001002828.1	PBC	50..243	CDD:281746	31/200 (16%)
		homeodomain	245..305	CDD:238039	20/102 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910