DRSC/TRiP Functional Genomics Resources

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Protein Alignment ct and Awh

DIOPT Version :9

Sequence 1:NP_524764.1 Gene:ct / 44540 FlyBaseID:FBgn0004198 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster


Alignment Length:136 Identity:38/136 - (27%)
Similarity:60/136 - (44%) Gaps:14/136 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly  1727 TSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITN 1791
            |:|...|..|.|...: .:|:.|..|:|||.:.|:..|.:|..|:...:|.:|:..||:.|....
  Fly   131 TTSSDEGCDGDGYHKS-KTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQV 194

  Fly  1792 WFHNHRMRLKQQVPHGPAGQDNPIPSRESTSATPFDPVQFRILLQ---QRLLELHKERMGMSGAP 1853
            ||.|.|.|.|:.:..|    .|.|...|.:|......:|.....|   |..:.|:..:.|:    
  Fly   195 WFQNSRARQKKHIHAG----KNKIREPEGSSFARHINLQLTYSFQNNAQNPMHLNGSKAGL---- 251

  Fly  1854 IPYPPY 1859
              ||.:
  Fly   252 --YPTH 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ctNP_524764.1 CUT 886..955 CDD:280527
CUT 1335..1411 CDD:280527
CUT 1616..1690 CDD:280527
Homeobox 1749..1801 CDD:278475 19/51 (37%)
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765
Homeobox 152..204 CDD:278475 19/51 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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