DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ct and HOXA3

DIOPT Version :9

Sequence 1:NP_524764.1 Gene:ct / 44540 FlyBaseID:FBgn0004198 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001371264.1 Gene:HOXA3 / 3200 HGNCID:5104 Length:443 Species:Homo sapiens


Alignment Length:511 Identity:118/511 - (23%)
Similarity:163/511 - (31%) Gaps:158/511 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1174 QVLNG------AQDLSLAAAAAKDIKLNGQRSSLE--HSAG--------SSSCSKDGERDDAYPS 1222
            |..||      .|....:||...|.:.:....||:  .|||        |.:|.:......:.|.
Human    19 QAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPP 83

  Fly  1223 SLHGRKSEGGGTP---------APPAP--------PSGPGTGAGAPPTAAPPTGGASSN----SA 1266
            ||        |.|         |||||        |..|...|..||::|.|...||:|    :|
Human    84 SL--------GEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANA 140

  Fly  1267 APSPLSNS------ILP------------PALSSQGEEFAATASPLQRMAS------ITNSLITQ 1307
            |.|||.||      |.|            .:.||.||..|...||..:.:|      .|::.:.:
Human   141 AKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVE 205

  Fly  1308 PPVTPHHS----TPQRPTKAVLPPITQQQFDM-FNNLNTEDIVRRVKEALSQYSISQRLFGESVL 1367
            .....|.:    .|:|...|.|..:|::|..: |.|       ||:|     |...|:  |:.:|
Human   206 LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN-------RRMK-----YKKDQK--GKGML 256

  Fly  1368 GLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGS 1432
            ..|.|.        .|.......|...::         |::|.||.|    .|.:......:|..
Human   257 TSSGGQ--------SPSRSPVPPGAGGYL---------NSMHSLVNS----VPYEPQSPPPFSKP 300

  Fly  1433 PQMPQGLASKMQAASLPMQKMMSELKLQEPAQAQHLMQQMQAAAMSAAMQQQQVAQAQQQAQQAQ 1497
            ||...||......||||        ....|...|   ::..||...|.........|........
Human   301 PQGTYGLPPASYPASLP--------SCAPPPPPQ---KRYTAAGAGAGGTPDYDPHAHGLQGNGS 354

  Fly  1498 QAQQHLQQQ----AQQHLQQQQHLAQQQHPHQQHHQAAAAAAALHHQSMLLTSPGLPPQHAISLP 1558
            ....|:|..    ...:::...:             :..|...|.|         ||  ||.|..
Human   355 YGTPHIQGSPVFVGGSYVEPMSN-------------SGPALFGLTH---------LP--HAASGA 395

  Fly  1559 PSAGGAQPGGPGGNQGSSNPSNSEKKPMLMPVHGTNAMRSLHQHMSPTVYEMAALT 1614
            ...|||.|.|.|.:.|   |...|..|....:.|       |......:.|...||
Human   396 MDYGGAGPLGSGHHHG---PGPGEPHPTYTDLTG-------HHPSQGRIQEAPKLT 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ctNP_524764.1 CUT 886..955 CDD:280527
CUT 1335..1411 CDD:280527 15/76 (20%)
CUT 1616..1690 CDD:280527
Homeobox 1749..1801 CDD:278475
HOXA3NP_001371264.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 75..147 25/79 (32%)
Antp-type hexapeptide 155..160 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..196 8/36 (22%)
Homeobox 195..248 CDD:395001 14/64 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..338 27/124 (22%)
DUF4074 378..441 CDD:404218 21/83 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..443 14/52 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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