DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ct and Obox2

DIOPT Version :9

Sequence 1:	NP_524764.1	Gene:	ct / 44540	FlyBaseID:	FBgn0004198	Length:	2175	Species:	Drosophila melanogaster
Sequence 2:	XP_038953187.1	Gene:	Obox2 / 292574	RGDID:	1307972	Length:	326	Species:	Rattus norvegicus

Alignment Length:	349	Identity:	73/349 - (20%)
Similarity:	115/349 - (32%)	Gaps:	133/349 - (38%)

- Green bases have known domain annotations that are detailed below.

  Fly  1653 SELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDT 1717
            |:|..:| .|::....|:.|.:..:..:..:.:|....|...|              .|.:|.::
  Rat    38 SQLPQEP-AWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQE--------------SQGSSRES 87

  Fly  1718 SSNDTNDFYTSSPGPGSVGSGVGGAPPSK--KQRVLFSEEQKEALRLAFALDPYPNVGTIEFLAN 1780
            .....:|.|.        |...|...|.|  |:|..:||:||..|:..||...||:......||:
  Rat    88 KPMALSDKYG--------GKQTGPVAPRKRRKERTQYSEKQKSVLQEHFAECQYPDKKLCLELAS 144

  Fly  1781 ELGLATRTITNWFHNHRMRLKQQ-VPHGPAGQDNPIPSRESTSATPFDPVQFRILLQQRLLELHK 1844
            .:.:..:.|..||.|:|.:.||: ||                .|.|
  Rat   145 LIRVTEKEIKVWFKNNRAKCKQKNVP----------------EALP------------------- 174

  Fly  1845 ERMGMSGAPIPYPPYFAAAAILGRSLAGIPGAAAAAGAAAAAAAVGASGGDELQALNQAFKEQMS 1909
            |:.|                          |:.|.:|:.....::...|||:.:.:..|.
  Rat   175 EKNG--------------------------GSEAVSGSTDFPGSIAVVGGDQGEPMATAI----- 208

  Fly  1910 GLDL-SMPTLKRERSDDYQDDLELEGGGHNLSDNESLEGQ---------EPED--------KTTD 1956
             ||: |.|.|                   |.|...||:|.         .|||        ...|
  Rat   209 -LDVDSTPKL-------------------NCSQESSLDGNWTYDGAMCCLPEDLLDGNAPVTAGD 253

  Fly  1957 YEK---VLHKSALAAAAAYMSNAV 1977
            :.:   |..:|.||||.|.::.||
  Rat   254 FGESAPVEAQSDLAAAGAPVAMAV 277

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ct	NP_524764.1	CUT	886..955	CDD:280527
		CUT	1335..1411	CDD:280527
		CUT	1616..1690	CDD:280527	7/36 (19%)
		Homeobox	1749..1801	CDD:278475	17/51 (33%)
Obox2	XP_038953187.1	HOX	109..165	CDD:197696	18/55 (33%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910