DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ct and vab-7

DIOPT Version :9

Sequence 1:	NP_524764.1	Gene:	ct / 44540	FlyBaseID:	FBgn0004198	Length:	2175	Species:	Drosophila melanogaster
Sequence 2:	NP_499401.1	Gene:	vab-7 / 176521	WormBaseID:	WBGene00006873	Length:	247	Species:	Caenorhabditis elegans

Alignment Length:	222	Identity:	61/222 - (27%)
Similarity:	80/222 - (36%)	Gaps:	54/222 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly  1746 KKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPAG 1810
            ::.|..||.||...|...||.:.|.:..|...||.||.|...||..||.|.||:.|:|
Worm    69 RRYRTAFSREQIGRLEREFAKENYVSRKTRGELAAELNLPEGTIKVWFQNRRMKDKRQ------- 126

  Fly  1811 QDNPIPSRESTSATPFDPVQFRILLQQRLLELHKERMGMSGAPIPYPPYF--AAAAILGRSLAGI 1873
                   |....|.||.|.....:|.                |..|..:.  |||:..|.:..|
Worm   127 -------RVGGLAWPFPPQMAAYMLN----------------PFAYEMWMKTAAASQFGATGPG- 167

  Fly  1874 PGAAAAAGAAAAAAAVGASGGDELQALN-QAFKEQMSGLDLSMPTLKRERSDD--------YQDD 1929
            .||....|::.:.:|.|:.  ..|..|. .:|..|.|....|.|     .|||        ..||
Worm   168 NGAYGNNGSSTSPSAAGSL--PFLPPLGFPSFLSQNSTKSPSSP-----HSDDSSKSKNTSSDDD 225

  Fly  1930 LELEGGGHNLSDNESLEGQEPEDKTTD 1956
               |....|.|::.|  ...|...:||
Worm   226 ---ESKPVNFSNSPS--SSSPSPYSTD 247

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ct	NP_524764.1	CUT	886..955	CDD:280527
		CUT	1335..1411	CDD:280527
		CUT	1616..1690	CDD:280527
		Homeobox	1749..1801	CDD:278475	22/51 (43%)
vab-7	NP_499401.1	Homeobox	72..124	CDD:278475	22/51 (43%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910