Protein Alignment ct and lhx6

DIOPT Version :9

• Sequence 1: NP_524764.1
• Gene: ct / 44540
• FlyBaseID: FBgn0004198
• Length: 2175
• Species: Drosophila melanogaster
• Sequence 2: XP_002941184.1
• Gene: lhx6 / 100493242
• XenbaseID: XB-GENE-493341
• Length: 389
• Species: Xenopus tropicalis
• Alignment Length: 400
• Identity: 87/400 - (21%)
• Similarity: 144/400 - (36%)
• Gaps: 137/400 - (34%)

  Fly  1556 SLPPSAGGAQ---PGGPGGN---------QGSSNPSNSEKKPMLMPVHGTNAMRSLHQ--HMSPT 1606
            :|.|.:.|.:   .|..||.         :|:|...:.:...|:......|...||.:  |.||:
 Frog     7 NLAPHSEGNKLDSEGDSGGKVMSQDKQIPRGASRRLDGKSPHMMSHSDDENMPCSLEKEDHSSPS 71

  Fly  1607 VYEMAAL-TQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHM------ 1664
            .....:: :....:..:.:..|.  :.::.|.:|....:|     .|:.|:     ||:
 Frog    72 PPSTPSVCSPPSSSSSVPSDGKN--ICSSCGLEILDRYLL-----KVNNLI-----WHVRCLECS 124

  Fly  1665 -----------LSIKGREPFIRM---------------QLWLSDANNVERLQLLKNERREA---- 1699
                       ..||.:|.|.:|               |::.||        .::..|..|
 Frog   125 VCRTSLRQHNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASD--------WVRRARGNAYHLA 181

  Fly  1700 ------SKRRRSTG----------------PNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGV--- 1739
                  .||:.|||                ....:|....:.|               |:|:
 Frog   182 CFACYSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAEN---------------GNGITLE 231

  Fly  1740 GGAP--------PSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNH 1796
            |..|        |:|:.|..|:.||.:.::..||.|..|:..|::.||:..||:.|.|..||.|.
 Frog   232 GAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNC 296

  Fly  1797 RMRLKQQVP-HG--PAGQDNPIPSRESTSATP---FDPVQFRILLQQRLLELH-----KERMGMS 1850
            |.|.|:..| ||  |.|   |.|:|.::|.:.   |.|  |....:.|::.||     :.:.|..
 Frog   297 RARHKKHTPQHGVPPQG---PTPTRITSSLSDDLHFSP--FNSPERARMVTLHGYIESQVQCGQM 356

  Fly  1851 GAPIPY--PP 1858
            ...:||  ||
 Frog   357 HCRLPYAGPP 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ct	NP_524764.1	CUT	886..955	CDD:280527
		CUT	1335..1411	CDD:280527
		CUT	1616..1690	CDD:280527	16/105 (15%)
		Homeobox	1749..1801	CDD:278475	20/51 (39%)
lhx6	XP_002941184.1	LIM1_Lhx6	96..149	CDD:188766	12/62 (19%)
		LIM2_Lhx6	157..211	CDD:188768	10/61 (16%)
		Homeobox	249..302	CDD:365835	20/52 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910