DRSC/TRiP Functional Genomics Resources

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Protein Alignment rg and NSMAF

DIOPT Version :10

Sequence 1:NP_001284879.1 Gene:rg / 44531 FlyBaseID:FBgn0266098 Length:3785 Species:Drosophila melanogaster
Sequence 2:NP_001138244.1 Gene:NSMAF / 8439 HGNCID:8017 Length:948 Species:Homo sapiens


Alignment Length:841 Identity:242/841 - (28%)
Similarity:388/841 - (46%) Gaps:199/841 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  2979 DRELDLDLTGPVNISTKARLIAPGLVAPGTVSITSTEMFFEVDEEHPEFQKIDGEVLKYCDHLHG 3043
            |:....:::..:::..||.::.|.:..||.|.||.|.::|:....:|:      .|::..     
Human   214 DKNRFQNISEKLHMECKAEMVTPLVTNPGHVCITDTNLYFQPLNGYPK------PVVQIT----- 267

  Fly  3044 KWYFSEVRAIFSRRYLLQNVALEIF-----LASRTSILFAFP-DQHTVKKVIKALPRVGVGIKYG 3102
               ..:||.|:.||:.|..:.||:|     |.|...:.|..| |:..:...|...      :::.
Human   268 ---LQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFYIATY------LEHH 323

  Fly  3103 IPQTRRASMMSPRQLMRNSNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYES 3167
            :.:....|.|            .:|||..:||::||:.||.:|.|:.|||:|||:|||::.:|.|
Human   324 VAEHTAESYM------------LQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPWIIHDYSS 376

  Fly  3168 KDLDLSLPSNYRDLSKPIGALNPSRRAYFEERYESWDSDTIPPFHYGTHYSTAAFTLNWLVRVEP 3232
            .:||||.|..:||||||:||||..|......||:....   |.|.||:|||:..:.|.:|||:.|
Human   377 SELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPE---PKFMYGSHYSSPGYVLFYLVRIAP 438

  Fly  3233 FTTMFLALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWY-----FLPEMFYNSSGYRLG 3292
              ...|.||.|:||..||:|:|::.:||||....:|.||||||:|     ||    .||....||
Human   439 --EYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYGDDVSFL----VNSLKLDLG 497

  Fly  3293 HREDGALVDDIELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAIRATNVFY 3357
            .|:.|.:|||:||||||.|||:|::.::.||||.:||..||:||||||||||:|.:|:.|.|||:
Human   498 KRQGGQMVDDVELPPWASSPEDFLQKSKDALESNYVSEHLHEWIDLIFGYKQKGSDAVGAHNVFH 562

  Fly  3358 YLTYEGSVDLDGVLDPVMREAVENQIRNFGQTPSQLLMEPHP----PRSSAMHLSPMMFSAMP-- 3416
            .|||||.|||:.:.||..:.|:..||..|||||.||.:.|||    |:..::..:....::|.  
Human   563 PLTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQLFVTPHPRRITPKFKSLSQTSSYNASMADS 627

  Fly  3417 ------EDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCN-YTASVQSPSY 3474
                  |||.:..|....:.:..:..:.:.::...:|..:|      |:|...: :|.|..|...
Human   628 PGEESFEDLTEESKTLAWNNITKLQLHEHYKIHKEAVTGIT------VSRNGSSVFTTSQDSTLK 686

  Fly  3475 AESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFVTTVDSRFLIACGF 3539
            ..|.:|....:.:                         :||.|  ..|:|.:...|:..:.:.  
Human   687 MFSKESKMLQRSI-------------------------SFSNM--ALSSCLLLPGDATVITSS-- 722

  Fly  3540 WDNSFRVFATETAKIVQIVFGHFGVVT--CMARSECNITSDCYIASGSADCTVLLWHWNARTQSI 3602
            |||:...::....:....:.||...|:  |.        .|..:.|.|.|.||.:|         
Human   723 WDNNVYFYSIAFGRRQDTLMGHDDAVSKICW--------HDNRLYSASWDSTVKVW--------- 770

  Fly  3603 VGEGDVPTPRATLTG-------------HEQAVTSVVISAELGLVVSGSSNGPV---------LI 3645
               ..||   |.:.|             |:.:|.::.::|...|:|||:..|.|         |:
Human   771 ---SGVP---AEMPGTKRHHFDLLAELEHDVSVDTISLNAASTLLVSGTKEGTVNIWDLTTATLM 829

  Fly  3646 H-----------TTF-----------------------GDLLRSL--DPPAE---FHSPELITMS 3671
            |           |.|                       |.|:.|:  |.|..   :....:::.|
Human   830 HQIPCHSGIVCDTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQRCFVWDGNSVLSGS 894

  Fly  3672 REGFIVINYDKGNVAAYTINGKKL--RHETHNDNLQCMLLSRDGEYLMTAG-DRGIVEVWR 3729
            :.|.:::         :.:.|.|:  |.:.|...:.|:.::.....::|.| ||.|: .|:
Human   895 QSGELLV---------WDLLGAKISERIQGHTGAVTCIWMNEQCSSIITGGEDRQII-FWK 945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgNP_001284879.1 Laminin_G_3 210..358 CDD:463865
DUF4704 629..1123 CDD:464870
PspC_subgroup_2 <1433..1807 CDD:468202
DUF1088 2791..2972 CDD:461925
PH_BEACH 2996..3093 CDD:434260 26/102 (25%)
Beach 3125..3401 CDD:460459 142/284 (50%)
NBCH_WD40 3502..3774 CDD:466575 55/294 (19%)
WD40 repeat 3524..3560 CDD:293791 5/35 (14%)
WD40 repeat 3566..3617 CDD:293791 11/52 (21%)
WD40 repeat 3622..3657 CDD:293791 15/79 (19%)
WD40 repeat 3669..3699 CDD:293791 5/31 (16%)
WD40 repeat 3704..3739 CDD:293791 7/27 (26%)
NSMAFNP_001138244.1 PH-like 223..316 CDD:473070 26/106 (25%)
Beach 335..606 CDD:460459 142/279 (51%)
WD40 <660..947 CDD:441893 64/354 (18%)
WD40 repeat 664..701 CDD:293791 9/67 (13%)
WD40 repeat 707..743 CDD:293791 6/37 (16%)
WD40 repeat 748..782 CDD:293791 13/56 (23%)
WD40 repeat 798..833 CDD:293791 9/34 (26%)
WD40 repeat 839..875 CDD:293791 5/35 (14%)
WD40 repeat 882..914 CDD:293791 5/40 (13%)
WD40 repeat 920..944 CDD:293791 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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