DRSC/TRiP Functional Genomics Resources

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Protein Alignment rg and Lrba

DIOPT Version :10

Sequence 1:NP_001284879.1 Gene:rg / 44531 FlyBaseID:FBgn0266098 Length:3785 Species:Drosophila melanogaster
Sequence 2:XP_006502410.1 Gene:Lrba / 80877 MGIID:1933162 Length:2871 Species:Mus musculus


Alignment Length:48 Identity:14/48 - (29%)
Similarity:17/48 - (35%) Gaps:12/48 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 PRPACPPPPPSGCSGSGVRAVARGAKTMTFDQPIYSPTP--QSYAQPP 82
            |:||..|..|..|.          ....||...::..||  .|.|.||
Mouse   301 PQPAFIPTGPILCM----------TPASTFVPMMHGATPSTMSAATPP 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgNP_001284879.1 Laminin_G_3 210..358 CDD:463865
DUF4704 629..1123 CDD:464870
PspC_subgroup_2 <1433..1807 CDD:468202
DUF1088 2791..2972 CDD:461925
PH_BEACH 2996..3093 CDD:434260
Beach 3125..3401 CDD:460459
NBCH_WD40 3502..3774 CDD:466575
WD40 repeat 3524..3560 CDD:293791
WD40 repeat 3566..3617 CDD:293791
WD40 repeat 3622..3657 CDD:293791
WD40 repeat 3669..3699 CDD:293791
WD40 repeat 3704..3739 CDD:293791
LrbaXP_006502410.1 Laminin_G_3 229..376 CDD:463865 14/48 (29%)
DUF4704 441..921 CDD:464870
DUF1088 1882..2061 CDD:461925
PH_BEACH 2087..2184 CDD:434260
Beach 2216..2492 CDD:460459
NBCH_WD40 2592..2856 CDD:466575
WD40 repeat 2608..2644 CDD:293791
WD40 repeat 2650..2703 CDD:293791
WD40 repeat 2708..2743 CDD:293791
WD40 repeat 2748..2777 CDD:293791
WD40 repeat 2784..2824 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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