DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rg and Nbeal1

DIOPT Version :10

Sequence 1:NP_001284879.1 Gene:rg / 44531 FlyBaseID:FBgn0266098 Length:3785 Species:Drosophila melanogaster
Sequence 2:XP_038940777.1 Gene:Nbeal1 / 689253 RGDID:1594799 Length:2717 Species:Rattus norvegicus


Alignment Length:1163 Identity:383/1163 - (32%)
Similarity:573/1163 - (49%) Gaps:186/1163 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  2688 KAPALVAQLPLTTPSREASLTQKLEIALGPVCPLLREIMVDFAPFLSKTLVGSHGQELLMEGKGL 2752
            |..||:....:........:..|||..|........||.....|.| :||| |...|||.....|
  Rat  1619 KLNALLQTKVIANQDEACYILGKLEHILSRSIKEQTEIYSFLIPLL-RTLV-SKIYELLFMNLHL 1681

  Fly  2753 TT--FKN-SHSVVELVMLLC-SQEWQNSLQKHAGLAFIELINEGRLLSHAMKDHIVRVA----NE 2809
            .:  |.| |.||.|.....| |.|||..::|:. :.:::     :..:|...|....:|    |.
  Rat  1682 PSLPFTNGSTSVFEDFQEYCNSNEWQVYIEKYI-VPYMK-----QYEAHTFYDGHENMALYWKNC 1740

  Fly  2810 AEFILNRMRADD------VLKHADFESQCAQTLLERREEERMCDHLITAARRRDNVI-------- 2860
            .|.::..|...|      .||   |:....:....:..:|.:         |.:|:|        
  Rat  1741 YEALMVNMHKRDREGGESKLK---FQEYFVEPFNRKARQENL---------RYNNMIKQLTSQQL 1793

  Fly  2861 -ASRLLEKVRNIMCNRHGAWGDSSSTSSGGAIVGAVQKSPYWKLDAWEDDARRRKRMVQNPRGSS 2924
             |||..:.:|..:....|.|.:..            |...:|||...|:.:|.|.::|.|....:
  Rat  1794 AASRHWKAIRLYLTCERGPWAEKK------------QNRIHWKLANVENYSRMRLKLVPNYNFKT 1846

  Fly  2925 HPQATLKAALENGGPE------DAILQTRDEFHTQIAVSRTHPSGQHNGELLDD---AELLIEDR 2980
            |.:|:  |..:|.|.:      ||:|.   |...|:.:|...   :...|||::   |..|.:::
  Rat  1847 HEEAS--ALRDNLGVQHLQPSSDALLL---EVVKQVRLSDVE---EDRLELLEEDTAASALTDEK 1903

  Fly  2981 ELDLDLTGPVNISTKARLIAPGLVAPGTVSITSTEMFFEVDEEHPEFQKIDGEVLKYCDHLHGKW 3045
            | :.|....:.::....||....:.||.:.:|:..::|..:    ..:|.||:...:      ||
  Rat  1904 E-EQDQKEKLVLTEDCELITVIDIIPGRLEVTTQHIYFHDN----SIEKEDGQGFDF------KW 1957

  Fly  3046 YFSEVRAIFSRRYLLQNVALEIFLASRTSILFAFPDQHTVKKVIKALPRVGVGIKYGIPQTRRAS 3110
            ..|::|.|..|||.|:..|||||...:::....| .:....||...|..:.....||   ||   
  Rat  1958 PHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNF-KKEVRNKVYSRLLSLHSPNSYG---TR--- 2015

  Fly  3111 MMSPRQLMRNSNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYESKDLDLSLP 3175
              ||::|.:.|.:||||..|||:||:||:.:||:||||||||.|||:|||:|.:|.|::|||:.|
  Rat  2016 --SPQELFKASGLTQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNP 2078

  Fly  3176 SNYRDLSKPIGALNPSRRAYFEERYESWDS--DTIPPFHYGTHYSTAAFTLNWLVRVEPFTTMFL 3238
            :.:||||||||.:|........|:||:::.  .||..||||||||.:|..:::|:|||||||:.:
  Rat  2079 TVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHI 2143

  Fly  3239 ALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWYFLPEMFYNSSGYRLGHRE-DGALVDD 3302
            .||.|:||..||.|.|:..:|:....:|.||||||||:::.||...|.:.:.||..: ...||:|
  Rat  2144 QLQSGRFDCADRQFHSIPATWQALMENTYDVKELIPEFFYFPEFLENQNEFNLGQLQVSKELVND 2208

  Fly  3303 IELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAIRATNVFYYLTYEGSVDL 3367
            :.||.||||.|:|:..:|.|||||:||..||:|||||||||||||.|:.|.|||||.:|||:|||
  Rat  2209 VILPRWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDL 2273

  Fly  3368 DGVLDPVMREAVENQIRNFGQTPSQLLMEPHPPRSSA---------MHLSPM-MFSAMPE----- 3417
            |.:.|...|:|:|..|.||||||.|||.||||||.||         ..:|.: :|..:||     
  Rat  2274 DALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAIQKQTKTEISTLNLFQHLPELKSFF 2338

  Fly  3418 -----DLCQMLK--FYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRW------NCNYTASV 3469
                 |...:||  ..:|.....:|..: |:|    ::||:..:....:.|      ..||...:
  Rat  2339 IEGISDGIPLLKAIIPRNQSRSFMSQGS-PEL----LITVSMNYVIGTHGWLPYDRNISNYFTFI 2398

  Fly  3470 QSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFVTTVDSRFL 3534
            :             :|.:|              |..::|.|...|:..|:|.|..|..:.|::.|
  Rat  2399 K-------------DQTVT--------------NPKAQRALSGPFAPGLEITSKLFAVSHDAKLL 2436

  Fly  3535 IACGFWDNSFRVFATETAKIVQIVFGHFGVVTCMARSECNITSDCYIASGSADCTVLLWHWNART 3599
            .:.|.||||.:|.:....|:|.....|..:|||:|...|.|    ::.|||.|.|.::|....:.
  Rat  2437 FSAGHWDNSIQVMSLTKGKLVSHNIRHIDIVTCLATDYCGI----HLISGSRDTTCMIWQITQQG 2497

  Fly  3600 QSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSSNGPVLIHT-TFGDLLRSLDPPAE-- 3661
            .:.||.  .|.|...|.||...:.||.||.||.:.||||.:|.|:||| ..|..||:|.||.|  
  Rat  2498 GTPVGL--APKPFQILYGHTDEILSVGISTELDMAVSGSRDGSVIIHTIQKGQYLRTLRPPCESS 2560

  Fly  3662 -FHSPELITMSREGFIVINY----------DKGNVAAYTINGKKLRHETHNDNLQCMLLSRDGEY 3715
             |.:...:.:|.||.||: |          ||..:..::||||.|..:..::.:..|.:.  ||:
  Rat  2561 LFLTIPSLAISWEGHIVV-YSSLEEKSTLKDKNLLHVFSINGKYLGSQVLSEQISDMCIV--GEH 2622

  Fly  3716 LMTAGDRGIVEVWRTFNL----APLYAFPACNAGIRSLALTHDQKYLLAGLSTGSIIV 3769
            ::|...:|::.|....:|    |||    |....|..:::|.:..::|.||..|.:||
  Rat  2623 IITGSLQGLLSVRELHSLKLSIAPL----AMRLPIHCVSITKEHSHILVGLEDGKLIV 2676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgNP_001284879.1 Laminin_G_3 210..358 CDD:463865
DUF4704 629..1123 CDD:464870
PspC_subgroup_2 <1433..1807 CDD:468202
DUF1088 2791..2972 CDD:461925 43/205 (21%)
PH_BEACH 2996..3093 CDD:434260 26/96 (27%)
Beach 3125..3401 CDD:460459 154/278 (55%)
NBCH_WD40 3502..3774 CDD:466575 93/286 (33%)
WD40 repeat 3524..3560 CDD:293791 11/35 (31%)
WD40 repeat 3566..3617 CDD:293791 16/50 (32%)
WD40 repeat 3622..3657 CDD:293791 18/35 (51%)
WD40 repeat 3669..3699 CDD:293791 13/39 (33%)
WD40 repeat 3704..3739 CDD:293791 10/38 (26%)
Nbeal1XP_038940777.1 DUF4704 888..>1195 CDD:464870
DUF4800 1604..1857 CDD:464996 63/271 (23%)
PH_BEACH 1910..2007 CDD:275391 27/107 (25%)
Beach 2027..2307 CDD:214982 155/279 (56%)
NBCH_WD40 2370..2682 CDD:466575 100/347 (29%)
WD40 repeat 2427..2462 CDD:293791 11/34 (32%)
WD40 repeat 2468..2513 CDD:293791 16/50 (32%)
WD40 repeat 2518..2554 CDD:293791 18/35 (51%)
WD40 repeat 2566..2598 CDD:293791 8/32 (25%)
WD40 repeat 2613..2648 CDD:293791 10/40 (25%)
Blue background indicates that the domain is not in the aligned region.

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