DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rg and nbeal1

DIOPT Version :9

Sequence 1:NP_001284879.1 Gene:rg / 44531 FlyBaseID:FBgn0266098 Length:3785 Species:Drosophila melanogaster
Sequence 2:XP_002937765.2 Gene:nbeal1 / 100494980 XenbaseID:XB-GENE-990549 Length:2716 Species:Xenopus tropicalis


Alignment Length:1174 Identity:384/1174 - (32%)
Similarity:555/1174 - (47%) Gaps:246/1174 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  2707 LTQKLEIALGPVCPLLREIMVDFAPFLSKTLVGSHGQELLM--EGKGLTTFKNSHSVVELVMLLC 2769
            |..|||..||.......|......|.: :|||....|.|.|  ....|.....:.|:.|.....|
 Frog  1644 LLGKLEGILGKSIKEKTETYSFLIPIV-RTLVSKIYQLLFMHLHLPSLPITNGNPSLFEDFQEYC 1707

  Fly  2770 -SQEWQNSLQKHAGLAF--IELINEGRLLSHAMKDHIVRVANEAEFI----LNRMRADDVLKHAD 2827
             |.||:..:.|:..|..  .|:...|:  .|.......:...||:.:    ..|.|.:..||..:
 Frog  1708 NSDEWRIFIDKYIILYMKQYEVDTFGK--CHEQMATYWKECYEAQMVNMHKRERERGESKLKFKE 1770

  Fly  2828 FESQCAQTLLE-----RREEERMCDHLITAARRRDNVIASRLLEKVRNIMCNRHGAWGDSSSTSS 2887
            |       .||     .|:|....::::.....:......:.....|.:.|.| |.|.|..    
 Frog  1771 F-------FLEPFNRKTRQENSRYNNMLKQVNSQYTATLRQWKAAQRYLFCER-GPWADRK---- 1823

  Fly  2888 GGAIVGAVQKSPYWKLDAWEDDARRRKRMVQNPRGSSHPQATLKAALENGGPEDAILQTRDEFHT 2952
                    :...||||...|:.:|.|.::|||....:|.:|   :||            ||    
 Frog  1824 --------ENWQYWKLSTVENYSRMRLKLVQNLNFDAHLEA---SAL------------RD---- 1861

  Fly  2953 QIAVSRTHPSGQHNGELLDDA-ELLIEDRELD-LDLTGPVNI-----------------STKARL 2998
            .:.|.:|.||.:  ..||:.| ::.:.|.|.| |:|....|:                 |.:..|
 Frog  1862 NLGVQQTEPSSE--SLLLEAAKQVKVSDLEEDQLELPEEENVVNMNDKEEQIQKEKLVLSEECDL 1924

  Fly  2999 IAPGLVAPGTVSITSTEMFFEVDEEHPEFQKIDGEVLKYCDHLHG-----KWYFSEVRAIFSRRY 3058
            |.......|.:.:|:..::|           .||...|.    .|     ||..|::|.|..|||
 Frog  1925 ITVMDAISGHLEVTTQHIYF-----------YDGSTEKE----EGVGFDFKWPLSQIREIHLRRY 1974

  Fly  3059 LLQNVALEIFLASRTSILFAFPDQHTVKKVIK----------ALPRVGVGIKYGIPQTRRASMMS 3113
            .|:..||||||..:|:....|      ||.::          .||.:     ||   ||     |
 Frog  1975 NLRRSALEIFLIDQTNYFLNF------KKEVRNKVYSRILSLRLPNI-----YG---TR-----S 2020

  Fly  3114 PRQLMRNSNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYESKDLDLSLPSNY 3178
            |::|::.|.:||||..||||||:||:.||||||||||||.|||:|||||.:|.|::|||:.|:.:
 Frog  2021 PQELLKASGLTQKWVNREISNFDYLIQLNTIAGRTYNDLAQYPVFPWVLQDYTSEELDLNNPAVF 2085

  Fly  3179 RDLSKPIGALNPSRRAYFEERYESWDS--DTIPPFHYGTHYSTAAFTLNWLVRVEPFTTMFLALQ 3241
            ||||||||.:|....|..:::|||::.  .||..||||||||.||..:::|:||||:||:.:.||
 Frog  2086 RDLSKPIGVVNEKNAAIVKDKYESFEDPLGTIDKFHYGTHYSNAAGVMHYLIRVEPYTTLHIQLQ 2150

  Fly  3242 GGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWYFLPEMFYNSSGYRLGH----REDGALVDD 3302
            .|:||..||.|.|:..:|:....:.:||||||||:::.||...|.:|:.|||    :|.   |:|
 Frog  2151 SGRFDCADRQFHSIPATWQALMDNPNDVKELIPEFFYFPEFLENKNGFDLGHLQITKEQ---VND 2212

  Fly  3303 IELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAIRATNVFYYLTYEGSVDL 3367
            :.||.||||||:|:..:|.||||||||..||:|||||||||||||.||.|.|||||.||||:|||
 Frog  2213 VILPKWAKSPEDFILKHRKALESEFVSAHLHEWIDLIFGYKQRGPAAIEALNVFYYCTYEGAVDL 2277

  Fly  3368 DGVLDPVMREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSAMPEDLCQMLKFYQNSPVI 3432
            |.:.:...|:|:|..|.||||||.|||.||||.|.||..:                 :.:.|.:.
 Frog  2278 DAIANEKERKALEGMINNFGQTPCQLLKEPHPTRLSAEEV-----------------YLKQSKLD 2325

  Fly  3433 HISANTYPQL-------------SLPSVVTVTAGHQFAVNRWNCNYTASVQSPSYAESPQSPGSN 3484
            :::.|.:..|             .:|.|..:...:|.                   .|..||||.
 Frog  2326 NVTLNLFQNLPDLKSFFIEGISDDVPVVKAIVPKNQL-------------------RSFLSPGSP 2371

  Fly  3485 QPL-TIDPVLAV--HG------TNNN----------SNAASRRHLGDNFSQMLKIRSNCFVTTVD 3530
            :.| |:...|.:  ||      |.:|          :|..::|.:...|:..|:|.|..||.:.|
 Frog  2372 ELLVTVSQTLIIGTHGWLPYDRTISNYFTFSKDQTVTNPKTQRLVSGPFAPGLEITSKLFVVSHD 2436

  Fly  3531 SRFLIACGFWDNSFRVFATETAKIVQIVFGHFGVVTCMARSECNITSDCYIASGSADCTVLLWHW 3595
            .:.|.:.|.||||.||.:....|:......|..:|||::...|.|    ::.|||.|.|.::|. 
 Frog  2437 GKVLFSGGHWDNSIRVTSLTKGKVTSQHIRHMDIVTCLSTDFCGI----HLISGSRDTTCMIWQ- 2496

  Fly  3596 NARTQSIVGE--GDVPT-PRATLTGHEQAVTSVVISAELGLVVSGSSNGPVLIHT-TFGDLLRSL 3656
                   :|:  ||:.: |...|.||...:|||.||.||...|||:.:|.|:||| ..|..:|:|
 Frog  2497 -------IGQQGGDLSSKPLQILYGHTDEITSVCISTELDTAVSGAKDGAVIIHTIRRGQYVRTL 2554

  Fly  3657 DPPAE----FHSPELITMSREGFIVIN--------YDKGNVAAYTINGKKLRHETHNDNL--QCM 3707
            .||:|    ...|.| .||.:|.|||:        .:|..:..|:||||.|..|...:.:  .|:
 Frog  2555 KPPSESSLLMSIPNL-AMSLDGHIVIHSSIEGKSIKNKNALHLYSINGKYLVSELLKEQVTDMCI 2618

  Fly  3708 LLSRDGEYLMTAGDRGIVEVWRTF----NLAPLYAFPACNAGIRSLALTHDQKYLLAGLSTGSII 3768
            :    .|.::....:|.:.:...:    :|.||    .....|..:::|.:..::|.||..|.:|
 Frog  2619 I----SENIVLGSRQGFLSIRDLYSLNLSLTPL----VMRVPIHCVSVTKENSHILVGLEDGKLI 2675

  Fly  3769 VFHI 3772
            :..|
 Frog  2676 IVGI 2679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgNP_001284879.1 LamG 210..358 CDD:304605
DUF4704 634..918 CDD:292415
MARCKS 1434..1751 CDD:280269
DUF1088 2791..2972 CDD:284000 41/189 (22%)
PH_BEACH 2996..3093 CDD:291510 28/111 (25%)
Beach 3125..3401 CDD:280327 163/281 (58%)
WD40 repeat 3524..3560 CDD:293791 12/35 (34%)
WD40 <3526..3729 CDD:295369 70/220 (32%)
WD40 <3530..3773 CDD:225201 80/265 (30%)
WD40 repeat 3566..3617 CDD:293791 15/53 (28%)
WD40 repeat 3622..3657 CDD:293791 17/35 (49%)
WD40 repeat 3669..3699 CDD:293791 13/37 (35%)
WD40 repeat 3704..3739 CDD:293791 6/40 (15%)
nbeal1XP_002937765.2 DUF4704 888..1144 CDD:374111
DUF4800 1610..1863 CDD:374334 59/260 (23%)
PH_BEACH 1914..2011 CDD:275391 29/117 (25%)
Beach 2032..2311 CDD:366934 163/281 (58%)
WD40 2436..2705 CDD:392136 80/265 (30%)
WD40 repeat 2472..2514 CDD:293791 15/53 (28%)
WD40 repeat 2519..2556 CDD:293791 18/36 (50%)
WD40 repeat 2564..2592 CDD:293791 8/28 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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