DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo2 and MYOM1

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:XP_024307049.1 Gene:MYOM1 / 8736 HGNCID:7613 Length:1718 Species:Homo sapiens


Alignment Length:1014 Identity:199/1014 - (19%)
Similarity:333/1014 - (32%) Gaps:341/1014 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 TDTGSHRIMLPAGGLFFLKVIHSRRESDAGTYWCEAK---NEFGVARSRNATLQVAFLRDEFRLE 194
            |||...||                  .:|..|..:..   :|.|:..|:.:|..           
Human   185 TDTEEERI------------------KEAAAYIAQRNLLASEEGITTSKQSTAS----------- 220

  Fly   195 PANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRY 259
             ..|..::...|..:..|.:.|    .:.|::..:...|.:|:      ...|:|:...|:....
Human   221 -KQTTASKQSTASKQSTASKQS----TASRQSTASRQSVVSKQ------ATSALQQEETSEKKSR 274

  Fly   260 QCVVKNVV-------GTRESATAFLK------VHVRPFLIRGPQNQTAVVGSSVVFQCRIGGDPL 311
            :.|::...       ...|:.|...|      :|...|:|: |::.|.....:|...|.|.|.|.
Human   275 KVVIREKAERLSLRKTLEETETYHAKLNEDHLLHAPEFIIK-PRSHTVWEKENVKLHCSIAGWPE 338

  Fly   312 PDVLWRRTASGGNMPLRRVH------VLEDR----SLKLDDVTLEDMGEYTCEADNAVGGITATG 366
            |.|.|.:    ..:|: .||      ::|.|    :|:::....||..:|...|.|..|.::|..
Human   339 PRVTWYK----NQVPI-NVHANPGKYIIESRYGMHTLEINGCDFEDTAQYRASAMNVKGELSAYA 398

  Fly   367 ILTVHAPPKFVIRPKNQLVEIGDEVLFECQANGHPRPTLYWSVEGNSSLLLPGYRDGRMEVTLTP 431
            .:.|.       |.|.:.    ||..|...|:..|                       :...:||
Human   399 SVVVK-------RYKGEF----DETRFHAGASTMP-----------------------LSFGVTP 429

  Fly   432 EGRSVLSIARFAREDSGKVVTCNALNAVGSVSSRTVVSVDTQFELPPPIIEQGPVNQTLPVKSIV 496
            .|                            .:||..:..|.:|:     :..|...:|:.     
Human   430 YG----------------------------YASRFEIHFDDKFD-----VSFGREGETMS----- 456

  Fly   497 VLPCRTLGTP-----VPQVSWYLDGIPIDVQEHERRNLS-DAGALTISDLQRHEDEGLYTCVASN 555
             |.||.:.||     .|::.||.:|:|:...:..:...| :...||.|.|.: |||||||.....
Human   457 -LGCRVVITPEIKHFQPEIQWYRNGVPLSPSKWVQTLWSGERATLTFSHLNK-EDEGLYTIRVRM 519

  Fly   556 RNGKSSWSGYLRLDTPTNPNIKFFR--APELSTYPGPPGKPQMVEKGENSVTLSWTRSNKVGGSS 618
            ......:|.|:           |.|  ..|:...|..|...:.:|..::.:.:||.:....|||.
Human   520 GEYYEQYSAYV-----------FVRDADAEIEGAPAAPLDVKCLEANKDYIIISWKQPAVDGGSP 573

  Fly   619 LVGYVIEMFGKNE--TDGWVAVG-TRVQNTTFTQTGLLPGVNYFFLIRAENSHGLSLPSPMSEPI 680
            ::||.|:   |.|  ||.|.... |.|:...|..|||:.|.:|.|.:||.|..|:..||.:|||:
Human   574 ILGYFID---KCEVGTDSWSQCNDTPVKFARFPVTGLIEGRSYIFRVRAVNKMGIGFPSRVSEPV 635

  Fly   681 TV--------------------------------------------------------------- 682
            ..                                                               
Human   636 AALDPAEKARLKSRPSAPWTGQIIVTEEEPSEGIVPGPPTDLSVTEATRSYVVLSWKPPGQRGHE 700

  Fly   683 GTRYF--------------NSGL----------DL---------------------SEARASLLS 702
            |..||              |:.|          ||                     |||....:.
Human   701 GIMYFVEKCEAGTENWQRVNTELPVKSPRFALFDLAEGKSYCFRVRCSNSAGVGEPSEATEVTVV 765

  Fly   703 GDVVELSNA--SVVDS----TSMKLTW-QIINGKYVEGFYVYARQLPNPIVNNPAPVTSNTNPLL 760
            ||.:::..|  .::.|    ||:.::| :..:.|.:.|:|:.|     .:..:......|.||:.
Human   766 GDKLDIPKAPGKIIPSRNTDTSVVVSWEESKDAKELVGYYIEA-----SVAGSGKWEPCNNNPVK 825

  Fly   761 GSTSTSASASASASALISTKPNIAAAG----KRDGETNQ----SGGGA----------------- 800
            ||..|........|.:...:. :.|||    .:|.|..:    .|||.                 
Human   826 GSRFTCHGLVTGQSYIFRVRA-VNAAGLSEYSQDSEAIEVKAAIGGGVSPDVCPALSDEPGGLTA 889

  Fly   801 ----------PT-----PLNTKYRMLTILNGGGASSCTITGLVQYTLYEFFIVPFYKSV-EGKPS 849
                      ||     .|.:|....::.:.......|....|..|:.|....|..|:. :||..
Human   890 SRGRVHEASPPTFQKDALLGSKPNKPSLPSSSQNLGQTEVSKVSETVQEELTPPPQKAAPQGKSK 954

  Fly   850 NSRIARTLEDVPSEAPYGMEALLLNSSAVFLKWKAPEL---KDRHGVLLNYHVIVRGIDTAHNFS 911
            :..:.:..:..|...|..:..|.....::.|.||.|:.   .:..|..:||..::.|:......:
Human   955 SDPLKKKTDRAPPSPPCDITCLESFRDSMVLGWKQPDKIGGAEITGYYVNYREVIDGVPGKWREA 1019

  Fly   912 RILTNVTIDAASPTLVLANLTEGVMYTVGVAAGNNAGVG 950
            .:..     .:.....::||.|.::|...|||.|.||:|
Human  1020 NVKA-----VSEEAYKISNLKENMVYQFQVAAMNMAGLG 1053

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 11/54 (20%)
I-set 91..184 CDD:254352 11/53 (21%)
I-set 190..279 CDD:254352 14/101 (14%)
Ig2_Robo 193..279 CDD:143201 14/98 (14%)
I-set 283..370 CDD:254352 25/96 (26%)
Ig 300..370 CDD:299845 21/79 (27%)
Ig 388..>457 CDD:299845 8/68 (12%)
I-set 479..561 CDD:254352 24/87 (28%)
Ig 496..561 CDD:143165 22/70 (31%)
FN3 588..681 CDD:238020 34/95 (36%)
FN3 <817..856 CDD:238020 8/39 (21%)
fn3 864..952 CDD:278470 21/90 (23%)
MYOM1XP_024307049.1 IG 316..402 CDD:214652 23/90 (26%)
I-set 450..517 CDD:333254 23/73 (32%)
FN3 543..633 CDD:238020 31/92 (34%)
FN3 671..764 CDD:238020 10/92 (11%)
FN3 772..862 CDD:238020 21/95 (22%)
FN3 967..1061 CDD:238020 21/92 (23%)
FN3 1072..1161 CDD:238020
I-set 1188..1254 CDD:333254
I-set 1407..1476 CDD:333254
Ig_Myomesin_like_C 1605..1696 CDD:319300
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8219
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.950

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