DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment robo2 and igsf9bb

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:XP_009293693.1 Gene:igsf9bb / 569554 ZFINID:ZDB-GENE-091112-15 Length:1439 Species:Danio rerio


Alignment Length:1463 Identity:312/1463 - (21%)
Similarity:493/1463 - (33%) Gaps:326/1463 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 RLEPANTRVAQGEVALMECGA--PRGSPEPQISWRKNGQTLNLVGN-------------KRIRIV 241
            |.||.......||..::.|..  |.......:.|.|.|..:....|             .|..:.
Zfish    27 REEPQFVTSRAGETVILGCDVVHPLNGQPYVVEWFKFGVPIPFFINFRFYPPHVDPEYAGRASLH 91

  Fly   242 DGGNLAIQEARQSDDGRYQCVV----KNVVGTRESATAFLKVHVRP-FLIRGPQNQTAVVGSSVV 301
            ...:|.|:..|..|.|.|:|.|    :........:...|.|:..| |....||...|..|.|:.
Zfish    92 GKSSLRIERVRSEDQGWYECKVLMLEQQYHTFHNGSWVHLTVNAPPTFTDTPPQYVEAKEGGSIT 156

  Fly   302 FQCRIGGDPLPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLEDMGEYTCEADNAVGGITATG 366
            ..|...|:|.|.|.|.|  .|..:.....:.:.|.||.|..::.||.|.|||.|.:..|....|.
Zfish   157 LSCTAFGNPKPSVSWLR--EGNPVQDSTKYKVSDGSLTLVSISREDRGAYTCRAYSEQGEAVHTT 219

  Fly   367 ILTVHAPPKFVIRPKNQLVEIGDEVLFECQANGHPRPTLY-WSVEGNSSLLLPGYRDGRMEVTLT 430
            .|.|..||..|..|:|..|.|..:..|.|||..:|....| |..|.::...   ..|.:..|::.
Zfish   220 RLLVQGPPFIVSPPENITVNISQDAFFTCQAEAYPGNLTYTWFWEEDNVFF---KNDLKRRVSIL 281

  Fly   431 PEGRSVLSIARFAREDSGKVVTCNALNAVG---SVSSRTVVSVDTQFELPPPIIEQG---PVNQT 489
            .:|.  |.|::...||:|| .||:..|::|   |.|:...|....:....||:|...   |....
Zfish   282 IDGS--LIISQVKPEDAGK-YTCSPSNSLGRPPSASAYLTVHYPARVINMPPVIYVAIGLPGYIR 343

  Fly   490 LPVKSIVVLPCRTLGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQRHEDE-GLYTCVA 553
            .||.:         ..||..|.|..||:|:.::::...:..:.|::.:|::.  ||. |.||||.
Zfish   344 CPVDA---------NPPVTSVKWKKDGLPLRIEKYPGWSQMEDGSIRVSEVT--EDSLGTYTCVP 397

  Fly   554 SNRNGKSSWSGYLRLDTPTNPNI-----KFFRAPELSTYPGPPGKPQMV---EKGENSVTLSWTR 610
            .|..|...       .:|..|.:     ||...|. ..|....|:..::   .:|:....::|.:
Zfish   398 YNSLGTMG-------PSPPAPLVLKDPPKFLVVPG-GEYRQEAGRELVIPCEAEGDPFPNITWRK 454

  Fly   611 SNKVGGSSLVGYVI--------EMFGKNETDGWVAVGTRVQNTTFTQTGLLPGVNYFFLIRAENS 667
              |||..|...:.:        :...|.:...|..|.:.|..:....|.||       :|     
Zfish   455 --KVGKPSRSKHNVLPRGSLQFKSLSKEDHGEWECVASNVATSITASTHLL-------VI----- 505

  Fly   668 HGLSLPSPMSEPITVGTRYFNSGLDLS-----EARASLLSGDVVELSNASVVDSTSMKLT----W 723
             |.|..:|....:||.|...|...|.|     |...|:..|.||:.......|..||.:.    |
Zfish   506 -GTSPHAPAKVHVTVSTTSANVSWDSSYDGGFEQTFSVWYGHVVKREQLGPHDWLSMPVPSGQHW 569

  Fly   724 QIINGKYVEGFYVYARQLPNPIVNNPAPVTSNTNPLLGSTSTSASASASASALISTKPNIAAAGK 788
            .::.|...|..|.::....|.:...|.......|.|:...||      ....::.|.|....|.:
Zfish   570 LLVQGLEPETAYQFSVLAQNKLGTGPFSEVVTVNTLVFPIST------PEPLVLLTPPRCLTANR 628

  Fly   789 RDGETNQSG--------GGAPTP---------LNTKYRMLTILNGGGASSCTITGLVQYTLYEFF 836
                 .|.|        ....:|         |..::.:|......|.:......|:|...|||.
Zfish   629 -----TQQGVLLTWIPPANHTSPIDHYIMDFRLGERWDVLDDAIPAGETEILARDLIQEAWYEFR 688

  Fly   837 IVPFYKSVEGKPSN-SRIARTLEDVPSEAP---------YGMEALLLNSSAVFL----------K 881
            ::...:.:..:||| ..::.|....|.|.|         .|:.|.:...:|..|          |
Zfish   689 VMAVMEDLVSEPSNVVGVSSTDYFPPPEVPDEGLARPVVAGIVATICFLAAAILFSTLAACFVNK 753

  Fly   882 WKAPELKDRHGVLLNYHVIVRGIDTAHNFSRILTNVTIDAASPTLVLANLTEGVMYTVGVAA--- 943
            .:..:||.|....|:.....:.::|..:..:|         ||..:         .::|..:   
Zfish   754 QRRRKLKRRRDPPLSITHCRKSVETPSSSGKI---------SPESI---------RSIGPPSESS 800

  Fly   944 --GNNAGVGPYCVPATLRLDPITKRLDPFINQRYPINQDHVNDVLTQPWFIILLGAILAVLMLSF 1006
              |..|...|.. ||...|....|.....|:::|.:::....  .|.|..:|..|.....:|...
Zfish   801 EDGLRAKKFPQS-PAKEELSLYKKTKRAIISKKYSVSKHEAE--ATTPIELISRGPDGRFVMDPT 862

  Fly  1007 GAMVFVKRKHM----MMKQSALN---TMRGNHTSDVLKMPSLSARNGNGYWLDSSTGGMVWRP-- 1062
            .....||.:.:    .:::|.|.   ........|...||.:.|               ..||  
Zfish   863 DMETPVKARRIEGFPFVEESDLYPEFRQSDEENDDPGPMPPVMA---------------TLRPHQ 912

  Fly  1063 -SPGGDSLEMQKDHIADYAPVCGAPGSPAGGGTSSGGSGGAGSGASGGDDIHGGHGSERNQQRYV 1126
             ||...|.|......| |:|....|                         :.|....|.::.:..
Zfish   913 ISPISSSQESYLQPPA-YSPRFQRP-------------------------MEGMTIMETSRLQAT 951

  Fly  1127 GEYSNIPTDYAEVSSFGKAPSEYGRHGNASPAP-------YATSSILSPHQQQQQQQPRYQQRPV 1184
            |:....|  :....:.|:..|..|..|...|.|       ...||::|.                
Zfish   952 GQIRGAP--HFRAFTHGQFYSYLGSPGEPEPPPPFYMPDTSPLSSVMSS---------------- 998

  Fly  1185 PGYGLQRPM-HPHYQQQQHQQQQAQQTHQQHQALQQHQQLP---PS-----NIYQQMSTTSEIYP 1240
            |.|.|:.|. ||..      .::..:...||.|:..: .||   ||     :|:|:...|   :.
Zfish   999 PPYHLEGPFGHPTI------PEEIGEGEIQHYAVSGY-TLPLAHPSTSRSPDIWQRPDFT---FA 1053

  Fly  1241 TNTGPSRSVYSEQYYYPKDKQRHIHITENKLSNCHTYEAAPGAKQSSPIS-SQFASVRRQQLPPN 1304
            |..||       .:.:|.....|:| .|..|.  ......|.|.|.|.:. |.:..:.:.:.|.:
Zfish  1054 TIEGP-------HFIFPPPHPLHLH-PEPPLP--PPLVLPPSALQPSTLQVSPYPGILQLEAPKS 1108

  Fly  1305 CSIGRESARFKVLNTDQGKNQQNLLDLDGSSMCYNGLADSGCG----GSPSPMAMLMSHEDEHAL 1365
             ..|:..::.|    .||...:.|...:..|:........|.|    ..|.|::        |.:
Zfish  1109 -RPGKSPSKVK----PQGLPAKRLPMQEAQSLGQLRHTSHGMGVPVLPYPDPVS--------HMV 1160

  Fly  1366 YHTADGDLDD-MERLYVKVDEQQPPQQQQQLIPLVPQHPAEGHLQSWRNQSTRSSRKNGQECIKE 1429
            ..::.|.||. ...|..::..:||.:.:..::.|.|..      .|...||..||.:...|.:..
Zfish  1161 GPSSFGSLDTRWYELTPRLSPRQPRRMEPSMVVLQPSR------LSPLTQSPISSHEGSPEIVVR 1219

  Fly  1430 P---------------SELIYAPGSVASERSLLSNSGSGTSSQPAGHNVXPLLP--------GSS 1471
            |               ||:...|.|.||    .|...|.:||...|... ...|        .:|
Zfish  1220 PRPRPSMIQPPIPPEMSEITLQPPSSAS----FSRRSSPSSSPAQGQGSRRASPSYRSHMAFATS 1280

  Fly  1472 LGQSQSKSQSQSQSQSDLQSQEQLYAREVRELL 1504
            .....|:|.|.....|::..|.....|...|:|
Zfish  1281 AASYPSQSPSPPVESSNIFGQMPTQRRTEEEIL 1313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317
I-set 91..184 CDD:254352
I-set 190..279 CDD:254352 21/105 (20%)
Ig2_Robo 193..279 CDD:143201 20/104 (19%)
I-set 283..370 CDD:254352 29/87 (33%)
Ig 300..370 CDD:299845 22/69 (32%)
Ig 388..>457 CDD:299845 19/69 (28%)
I-set 479..561 CDD:254352 23/85 (27%)
Ig 496..561 CDD:143165 18/65 (28%)
FN3 588..681 CDD:238020 18/103 (17%)
FN3 <817..856 CDD:238020 9/39 (23%)
fn3 864..952 CDD:278470 17/111 (15%)
igsf9bbXP_009293693.1 IG_like 30..113 CDD:214653 17/82 (21%)
Ig 41..113 CDD:143165 14/71 (20%)
IG_like 144..223 CDD:214653 27/80 (34%)
IGc2 151..208 CDD:197706 20/58 (34%)
I-set 227..319 CDD:254352 29/97 (30%)
Ig <263..319 CDD:299845 16/61 (26%)
Ig_2 326..414 CDD:290606 26/105 (25%)
IG_like 329..403 CDD:214653 23/84 (27%)
IG_like 424..504 CDD:214653 16/89 (18%)
Ig 440..504 CDD:299845 13/72 (18%)
FN3 509..604 CDD:238020 21/94 (22%)
FN3 620..704 CDD:238020 16/88 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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